Changeset 1919

Timestamp:

Apr 10, 2013, 11:05:19 AM (10 years ago)

Author:

Nicklas Nordborg

Message:

References #425: Generate a lab protocol for RNA -> cDNA processing

• Changed order of columns in the list protocol.
• Use white background in the plate layout.
• Amount of water is right-aligned in each cell.
• Samples with no storage box (eg. stratagene) now have an empty line so that volumes are aligned vertically.
• Latest stratagene concentration is stored and re-used the next time.

Location:

extensions/net.sf.basedb.reggie/trunk/resources/libprep

Files:

• mrna_protocol.jsp (modified) (4 diffs)
• mrna_protocol2.jsp (modified) (10 diffs)

extensions/net.sf.basedb.reggie/trunk/resources/libprep/mrna_protocol.jsp

@@ -49 +49 @@
     Main.show('gocreate');
     bioPlateOnChange();
+    loadStratageneConc();
   }
   else
@@ -86 +87 @@
 function viewProtocol(type)
 {
+  saveStratageneConc();
+  
   var frm = document.forms['reggie'];
   if (frm.bioplate && !frm.bioplate.disabled)
@@ -109 +112 @@
   setInnerHTML('comments', bioplate.comments);
   frm.poolSchema.value = bioplate.poolSchema;
+}
+
+function saveStratageneConc()
+{
+  if (!window.localStorage) return;
+  
+  var frm = document.forms['reggie']; 
+  var stratageneInfo = new Object();
+  stratageneInfo.conc = frm.stratageneConc.value;
+  window.localStorage.setItem('reggie.stratagene-info', JSON.stringify(stratageneInfo));
+}
+
+function loadStratageneConc()
+{
+  if (!window.localStorage) return;
+  var frm = document.forms['reggie']; 
+  
+  var stratageneInfo = JSON.parse(window.localStorage.getItem('reggie.stratagene-info'));
+  if (stratageneInfo)
+  {
+    frm.stratageneConc.value = stratageneInfo.conc;
+  }
 }
 </script>
@@ -133 +158 @@
   %>
 
-  <form name="reggie" onsubmit="return false;" action="mrna_protocol2.jsp" method="post" target="_new">
+  <form name="reggie" onsubmit="return false;" action="mrna_protocol2.jsp" method="post" target="_blank">
   <input type="hidden" name="ID" value="<%=ID%>">
   <input type="hidden" name="view" value="list">

extensions/net.sf.basedb.reggie/trunk/resources/libprep/mrna_protocol2.jsp

@@ -121 +121 @@
       c += ' ' + WELL_ALPHA[well.row] + (well.column+1);
     }
+    else
+    {
+      c = ' ';
+    }
     return c;
   }
@@ -244 +248 @@
         if (rna.qc) cls += ' qc';
         if (rna.external) cls += ' external';
-        if (rna.stratagene)cls += ' stratagene';
+        if (rna.stratagene) cls += ' stratagene';
       }
       return cls;
@@ -264 +268 @@
         if (rna.volume && rna.water)
         {
-          text += '<div><span class="volume">'+Numbers.formatNumber(rna.volume, 1)+'</span>';
-          text += ' + <span class="water">'+Numbers.formatNumber(rna.water, 1)+'</span>µl</div>';
+          text += '<div><span class="volume">'+Numbers.formatNumber(rna.volume, 1)+'µl</span>';
+          text += '<span class="water">'+Numbers.formatNumber(rna.water, 1)+'µl</span></div>';
         }
         text += '<div class="remarks">'+ rna.remarks.join('; ') + '</div>';
@@ -353 +357 @@
   }
   
-  .external .rna:before, .stratagene .rna:before
+  .external .rna:before
   {
     content: '[';
   }
-  .external .rna:after, .stratagene .rna:after
+  .external .rna:after
   {
     content: ']';
@@ -410 +414 @@
     max-width: 8.2%;
     min-width: 8.2%;
+    background-color: #FFFFFF;
+    padding: 4px;
+  }
+  
+  #plateview .well:hover
+  {
+    padding: 3px;
   }
     
@@ -420 +431 @@
   {
     font-weight: bold;
+    margin-bottom: 0.25em;
+  }
+  #plateview .box
+  {
+    margin-bottom: 0.25em;
   }
   #plateview .ndconc
@@ -436 +452 @@
   {
     color: #0000C8;
+    float: right;
   }
   #plateview .remarks
@@ -504 +521 @@
         <th class="rna"></th>
         <th class="box">Storage</th>
-        <th class="workplate">Work</th>
         <th>NDConc</th>
         <th>Remain</th>
+        <th class="workplate">Work</th>
         <th colspan="2">Volume</th>
         <th></th>
@@ -514 +531 @@
         <th class="rna">RNA</th>
         <th class="box">box</th>
-        <th class="workplate">plate</th>
         <th>(ng/µl)</th>
         <th>(µg)</th>
+        <th class="workplate">plate</th>
         <th>(µl)</th>
         <th>H<sub>2</sub>O</th>
@@ -546 +563 @@
           <td class="rna" id="rna.<%=idSuffix%>">empty</td>
           <td class="box" id="box.<%=idSuffix%>"></td>
-          <td class="workplate"><%=rowF.format(r)+colF.format(c)%></td>
           <td class="ndconc" id="ndconc.<%=idSuffix%>"></td>
           <td class="remain" id="remain.<%=idSuffix%>"></td>
+          <td class="workplate"><%=rowF.format(r)+colF.format(c)%></td>
           <td class="volume" id="volume.<%=idSuffix%>"></td>
           <td class="water" id="water.<%=idSuffix%>"></td>