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Timestamp:
Aug 1, 2013, 4:08:29 PM (9 years ago)
Author:
olle
Message:

Fixes #84. ReplicateError BASE1 plug-in configuration files lib/pluginConfigurationAA.base and lib/pluginConfigurationWA.base updated with info on parameters; specifically that a value of sdLimit <= 0 corresponds to unlimited standard deviation, i.e. no filtering is performed based on the standard deviation.

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1 edited

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  • plugins/base1/se.lu.onk.ReplicateError/trunk/lib/pluginConfigurationWA.base

    r790 r2013  
    44versionNumber @VERSION@
    55name  Filter: ReplicateError (within assays)
    6 descr Implementation of 'Analysis of replicates' (cf. figure 4 in the publication)\r\nWithin the fold: assessing differential expression measures and reproducibility in microarray assays.\r\nYang IV et al. Genome Biol. 2002 Oct 24;3(11):research0062. Epub 2002 Oct 24.
     6descr Implementation of 'Analysis of replicates' (cf. figure 4 in the publication)\r\nWithin the fold: assessing differential expression measures and reproducibility in microarray assays.\r\nYang IV et al. Genome Biol. 2002 Oct 24;3(11):research0062. Epub 2002 Oct 24.\r\n\r\nParameters:\r\n\r\nStandard deviation limit - Filters out values outside the limit. A limit value <= 0 indicates that no limit is used.\r\n\r\nLeave singletons - Flag indicating if spots occurring once should be leaved.\r\n\r\nassayname - Name of assay.\r\n\r\nGroup\r\n\r\nSort\r\n\r\nCenter of mass - median (default) or mean\r\n\r\nAssays to include
    77execName  runWA
    88geneAverages  0
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