Changeset 2086


Ignore:
Timestamp:
Oct 18, 2013, 1:11:18 PM (9 years ago)
Author:
Nicklas Nordborg
Message:

References #501: Generate lab protocol for clustering

Replaced ReadString with SequenceString.

Location:
extensions/net.sf.basedb.reggie/trunk
Files:
2 edited

Legend:

Unmodified
Added
Removed
  • extensions/net.sf.basedb.reggie/trunk/resources/libprep/flowcell_protocol2.jsp

    r2069 r2086  
    127127      }
    128128      flowCellNameList += flowCellName;
    129       var flowCellDescription = flowCell['description'];
    130       var readString = flowCell['readString'];
    131129      setInnerHTML('flowCellName.'+flowCellNo, flowCellName);       
    132130      setInnerHTML('flowCellName2.'+flowCellNo, flowCellName);       
    133       setInnerHTML('flowCellDescription.'+flowCellNo, flowCellDescription);       
    134       setInnerHTML('readString.'+flowCellNo, readString);
     131      setInnerHTML('flowCellDescription.'+flowCellNo, flowCell.description);       
     132      setInnerHTML('sequenceString.'+flowCellNo, flowCell.SequenceString);
    135133      setInnerHTML('flowCellId.'+flowCellNo, flowCell.externalId);
    136134      var flowCellLanes = flowCell['lanes'];
     
    353351    <th></th>
    354352    <th style="width: 20%; border-right: 0;">HiSeq position</th>
    355     <th>ReadString</th>
     353    <th>SequenceString (Read 1 - Index - Read 2)</th>
    356354  </tr>
    357355
     
    365363      <th id="flowCellName2.<%=c%>" class="subprompt">Flowcell<%=c %></th>
    366364      <td><b><div class="colorbox"></div>A <div class="colorbox"></div>B</b></td>
    367       <td><div id="readString.<%=c%>">ReadString</div></td>
     365      <td><div id="sequenceString.<%=c%>">SequenceString</div></td>
    368366    </tr>
    369367    <%
  • extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/servlet/FlowCellServlet.java

    r2085 r2086  
    197197          fc.setAnnotation("description", physBA.getDescription());
    198198          fc.setAnnotation("numLanes", physBA.getSize());
    199           fc.loadAnnotations(dc, "readString", Annotationtype.READ_STRING, null);
     199          fc.loadAnnotations(dc, "SequenceString", Annotationtype.SEQUENCE_STRING, null);
    200200          fc.loadAnnotations(dc, "externalId", Annotationtype.FLOWCELL_ID, null);
    201201         
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