Changeset 2237 for extensions/net.sf.basedb.reggie/trunk/resources/libprep/sequencing_started.jsp

Timestamp:

Feb 20, 2014, 9:48:35 AM (9 years ago)

Author:

Nicklas Nordborg

Message:

References #562: Re-design clustering and sequencing startup wizards

Load and display information about pools and library plate in the sequencing startup wizard to make it easier to verify that the correct runparameters.xml file has been selected.

File:

• extensions/net.sf.basedb.reggie/trunk/resources/libprep/sequencing_started.jsp (modified) (5 diffs)

extensions/net.sf.basedb.reggie/trunk/resources/libprep/sequencing_started.jsp

@@ -153 +153 @@
   setInnerHTML('startDate', '');
   setInnerHTML('sequencingCycles', '');
+  setInnerHTML('flowCellName', 'Flow cell information');
+  setInnerHTML('pools', '');
+  setInnerHTML('libPlate', '');
   Main.hide('existing-sequencing-runs');
   setInnerHTML('existing-sequencing-runs', '');
@@ -247 +250 @@
   if (flowCell == null)
   {
+    setInnerHTML('flowCellName', 'Can\'t find flow cell ' + info.FlowCellID);
     throw 'Flow cell with ID='+info.FlowCellID+' not found.';
   }
+  
+  setInnerHTML('flowCellName', Main.encodeTags(flowCell.name));
+
+  var pools = flowCell.pools;
+  var html = '';
+  var libPlateHtml = '';
+  for (var poolNo = 0; poolNo < pools.length; poolNo++)
+  {
+    var pool = pools[poolNo];
+    if (poolNo > 0) html += ', ';
+    html += Main.encodeTags(pool.name);
+    if (pool.LibPlate && libPlateHtml.indexOf(pool.LibPlate.name) == -1)
+    {
+      if (libPlateHtml.length > 0) libPlateHtml += ', ';
+      libPlateHtml += Main.encodeTags(pool.LibPlate.name);
+    }
+  }
+  setInnerHTML('pools', html);
+  setInnerHTML('libPlate', libPlateHtml || 'n/a');
+
   var html = '';
   html += '<tr valign="top" class="fc-info">';
-  html += '<td class="prompt" colspan="2">Existing sequencing runs for ' + flowCell.name + '</td>';
+  html += '<td class="prompt" colspan="2">Existing sequencing runs</td>';
   html += '';
   html += '<td class="status"></td>';
@@ -534 +558 @@
         </td>
         <td class="status" id="runParametersXml.status"></td>
-        <td class="help" rowspan="8"><span id="runParametersXml.message" class="message" style="display:none;"></span>
+        <td class="help" rowspan="12"><span id="runParametersXml.message" class="message" style="display:none;"></span>
           Select the <b>runParameters.xml</b> file that was created by the HiSeq. Typically found in
           <b>D:\Illumina\HiSeqTemp\&lt;run-folder&gt;</b> subfolder.
@@ -540 +564 @@
       </tr>
       <tr valign="top" class="fc-info" style="border-top: 1em solid transparent;">
+        <td class="prompt" colspan="2">Sequencing information</td>
+        <td class="status"></td>
+      </tr>
+      <tr valign="top" class="fc-info">
         <td class="subprompt">Experiment</td>
         <td class="input" id="experimentName"></td>
@@ -572 +600 @@
         <td class="subprompt">Sequencing cycles</td>
         <td class="input" id="sequencingCycles"></td>
+        <td class="status"></td>
+      </tr>
+      <tr valign="top" class="fc-info">
+        <td class="prompt" colspan="2" id="flowCellName">Flow cell information</td>
+        <td class="status"></td>
+      </tr>
+      <tr valign="top" class="fc-info">
+        <td class="subprompt">Pools</td>
+        <td class="input" id="pools"></td>
+        <td class="status"></td>
+      </tr>
+      <tr valign="top" class="fc-info">
+        <td class="subprompt">LibPlate</td>
+        <td class="input" id="libPlate"></td>
         <td class="status"></td>
       </tr>