Changeset 2459

Timestamp:

May 26, 2014, 9:08:17 AM (9 years ago)

Author:

Nicklas Nordborg

Message:

References #548: Register Demux and Merge as ended

Exit script if the data for a flow cell can't be found.

File:

• extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/servlet/DemuxMergeServlet.java (modified) (1 diff)

extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/servlet/DemuxMergeServlet.java

@@ -588 +588 @@
             Integer runNumber = (Integer)Annotationtype.SEQUENCING_RUN_NUMBER.getAnnotationValue(dc, seqRun);
             script.cmd("RUN_ARCHIVE=`find " + demux_runArchive + " -maxdepth 2 -name " + dataFolder + " -type d -print -quit 2> /dev/null || true`");
+            script.cmd("if [ -z \"$RUN_ARCHIVE\" ]; then");
+            script.cmd("echo \"Can't find data folder "+dataFolder+" in " + demux_runArchive + "\" 1>&2");
+            script.cmd("exit 1");
+            script.cmd("fi");
             script.cmd("mkdir -p " + demuxName);
             script.newLine();