Changeset 265

Timestamp:

Apr 27, 2007, 2:58:06 PM (15 years ago)

Author:

Johan Enell

Message:

the sections sets default value at construction

Location:

trunk/se/lu/onk/BaseFile/src/basefile

Files:

• BASEFileAssaySection.java (modified) (2 diffs)
• BASEFileDataSection.java (modified) (3 diffs)
• BASEFileSpotSection.java (modified) (3 diffs)

trunk/se/lu/onk/BaseFile/src/basefile/BASEFileAssaySection.java

@@ -37 +37 @@
   {
     super("assays");
+    this.setAnnotationColumns("");
   }
   
@@ -82 +83 @@
   {
     return getColIndex("annotationColumns", col);
-  }
-  
-  public final List<String> getColumns()
-  {
-    return findFieldList("columns");
-  }
-  
-  public final int getColumnsColIndex(String col) throws BASEFileException
-  {
-    return getColIndex("columns", col);
-  }
-
-  public final String setColumns(Object... values)
-  {
-    return setHeader("columns", values);
   }
 

trunk/se/lu/onk/BaseFile/src/basefile/BASEFileDataSection.java

@@ -24 +24 @@
 package basefile;
 
+import java.util.List;
+
 public abstract class BASEFileDataSection extends BASEFileSection
 {
@@ -46 +48 @@
   {
     super(type);
+    this.setCount(0);
+    this.setColumns();
   }
 
@@ -61 +65 @@
   {
     return width;
+  }
+  
+  public final List<String> getColumns()
+  {
+    return this.findFieldList("columns");
+  }
+
+  public final int getColumnsColIndex(String col) throws BASEFileException
+  {
+    return this.getColIndex("columns", col);
+  }
+
+  public final String setColumns(Object... values)
+  {
+    return setHeader("columns", values);
   }
   

trunk/se/lu/onk/BaseFile/src/basefile/BASEFileSpotSection.java

@@ -35 +35 @@
   {
     super("spots");
+    this.setChannels(0);
+    this.setAssayFields();
+    this.setAssays();
   }
   
@@ -128 +131 @@
     return reporterData.set(i, reporter);
   }
-  
-  public List<String> getColumns()
-  {
-    return this.findFieldList("columns");
-  }
-
-  public int getColumnsColIndex(String col) throws BASEFileException
-  {
-    return this.getColIndex("columns", col);
-  }
 
   public List<Integer> getAssays()
@@ -220 +213 @@
   {
     return setHeader("assayFields", values);
-  }
-
-  public final String setColumns(Object... values)
-  {
-    return setHeader("columns", values);
   }