Changeset 266 for trunk/se/lu/thep/affymetrix/Makefile

Timestamp:

May 7, 2007, 9:18:49 AM (16 years ago)

Author:

Peter Johansson

Message:

initial check-in of PLIER refs #45

File:

• trunk/se/lu/thep/affymetrix/Makefile (modified) (4 diffs)

trunk/se/lu/thep/affymetrix/Makefile

@@ -3 +3 @@
 # ======================================================================
 # Copyright (C) 2006 Jari Häkkinen
+# Copyright (C) 2007 Peter Johansson
 #
 # This file is part of RMAExpress plug-in for BASE,
@@ -46 +47 @@
 # 'make dist' with optional BASEROOT or BASECORE will create binary
 # distribution and source distribution packages with corresponding
-# md5sum files. NOTE if make dist fails you MUST do 'make
-# versionunfix' to recover the RMAExpress.java to its previous
-# state. If you fail to do this, the java file will become slightly
-# corrupt. This is because 'make dist' will actually use 'sed' to
-# replace strings in the source with the version number below.
+# md5sum files. 
 #
 
-VERSION = 0.5
+VERSION = pre0.6
+
+SRCDIR = .src
+TOPDIR = ../../../..
 
 # Prefix for where to install the plug-in. This is normally the path
@@ -67 +67 @@
 PLUGINDIR ?= $(BASEROOT)/$(RELPLUGINDIR)
 
-JAR  = RMAExpress.jar
+JAVA = RMAExpress.java Plier.java
+CLASS = $(JAVA:.java=.class)
+JAR  = affymetrix.jar
 
 # Files to include in binary distributions
-BINDISTFILES = AUTHORS ChangeLog COPYING INSTALL Makefile README RMAExpress.jar
+BINDISTFILES = AUTHORS ChangeLog COPYING INSTALL Makefile README $(JAR)
 # Binary package name
-BINPACKAGEFILE = base_rmaexpress_plugin-$(VERSION)
+BINPACKAGEFILE = base_affymetrix_plugin-$(VERSION)
 # Files to include in binary distributions
-SRCDISTFILES = AUTHORS ChangeLog COPYING INSTALL Makefile README RMAExpress.java
+SRCDISTFILES = AUTHORS ChangeLog COPYING INSTALL Makefile README $(JAVA)
 # Binary package name
-SRCPACKAGEFILE = base_rmaexpress_plugin-$(VERSION)-src
+SRCPACKAGEFILE = $(BINPACKAGEFILE)-src
 
-all: $(JAR)
+all: $(SRCDIR) $(JAR)
 
-clean:; @(rm -rf $(JAR) *.class *~ \
+clean:; @(rm -rf *.jar *.class *~ $(SRCDIR)\
   $(BINPACKAGEFILE) $(BINPACKAGEFILE).tar.gz $(BINPACKAGEFILE).tar.gz.MD5 \
-  $(SRCPACKAGEFILE) $(SRCPACKAGEFILE).tar.gz $(SRCPACKAGEFILE).tar.gz.MD5 )
+  $(SRCPACKAGEFILE) $(SRCPACKAGEFILE).tar.gz $(SRCPACKAGEFILE).tar.gz.MD5 ) 
 
-dist: clean versionfix $(JAR) versionunfix
+dist: clean $(JAR) 
   @echo Creating dist files
   @mkdir $(BINPACKAGEFILE)
@@ -95 +97 @@
   @md5sum $(SRCPACKAGEFILE).tar.gz > $(SRCPACKAGEFILE).tar.gz.MD5
 
-.PHONY: install
-install: $(JAR)
-  mkdirhier $(PLUGINDIR)
-  cp -p RMAExpress.jar $(PLUGINDIR)
+.PHONY: all clean dist install install-precompiled 
+
+install: $(JAR) install-precompiled
 
 install-precompiled:
-  mkdirhier $(PLUGINDIR)
-  cp -p RMAExpress.jar $(PLUGINDIR)
+  @install -d $(PLUGINDIR)
+  install -p $(JAR) $(PLUGINDIR)
 
-$(JAR): RMAExpress.class
+$(JAR): $(CLASS)
   @echo Creating $(JAR)
-  @( cd ../../../.. ; \
+  @( cd $(TOPDIR) ; \
     jar cf se/lu/thep/affymetrix/$(JAR) se/lu/thep/affymetrix/*.class )
 
-versionfix:;
-  @mv RMAExpress.java RMAExpress.java_orig
-  @sed ''s/MAKESUBSTOFVERSIONNUMBER/$(VERSION)/'' \
-      RMAExpress.java_orig > RMAExpress.java
+$(SRCDIR)/%.java: %.java Makefile
+  @sed -e 's/@version.*/@version $(VERSION)/' \
+  "$<" > "$@"; \
 
-versionunfix:
-  @mv RMAExpress.java_orig RMAExpress.java
+%.class: $(SRCDIR)/%.java
+  javac -cp $(BASECORE) -d $(TOPDIR) $<
 
-%.class: %.java
-  @javac -cp $(BASECORE) $<
+$(SRCDIR):
+  mkdir $@