Changeset 274

Timestamp:

May 21, 2007, 7:00:16 PM (16 years ago)

Author:

Peter Johansson

Message:

some more lippstick refs #45

File:

• trunk/se/lu/thep/affymetrix/INSTALL (modified) (3 diffs)

trunk/se/lu/thep/affymetrix/INSTALL

@@ -76 +76 @@
 3.v).
 
-If you are upgrading a previously installed RMAExpress plug-in for
-BASE you can safely skip to item 7) below.
+If you are upgrading a previously installed RMAExpress or Plier
+plug-in for BASE you can safely skip to item 7) below.
 
 
 == 1. Pre-requisites ==
 
-i) Pre-requisite for both all install options: 
-This plug-in will only work with BASE 2.0 or later, i.e. BASE 1.2.x is
-not (and will never be) supported.
-
-ii) Pre-requisite for RMAExpress plug-in (both binary package and
-subversion tree installs): Installation of RMAExpressConsole.
+=== BASE 2 ===
+This plug-in package will only work with BASE 2.0 or later, i.e. BASE
+1.2.x is not (and will never be) supported.
+
+=== RMAExpressConsole and apt-probeset-summarize === 
+Pre-requisite for RMAExpress plug-in (both binary package and
+subversion tree installs) is that RMAExpressConsole is installed.
 
 Pre-requisite for Plier plug-in (both binary package and
-subversion tree installs): Installation of apt-probeset_summarize.
+subversion tree installs) is that apt-probeset_summarize is installed.
 
 RMAExpressConsole is available in the RMAExpress package written by
@@ -105 +106 @@
 
 apt-probeset-summarize is available in the Affymetrix Power Tools
-package available through Affymetrix home page
+(APT) package available through Affymetrix home page
 http://www.affymetrix.com/support/developer/powertools/index.affx
+
+APT is available as a Windows installer package and pre-built binaries
+for Linux and Mac OS-X. If you prefer building yourself, the source
+code is available as well. Though, it should be noted, we have
+experienced some problems building APT and at the time being we have
+not succeeded.
 
 You should install the binaries (RMAExpressConsole and
@@ -118 +125 @@
 fulfilled, but execution of the plug-in within BASE will fail.
 
-iii) Pre-requisite for subversion tree compilation:
-Compile time access to BASE core jar file.
+=== Compile time access to BASE core jar file. ===
+This is only needed for compilation and installition from a subversion
+tree, i.e., it is not needed when installing a pre-compiled package. 
 
 The BASE2Core.jar (from BASE 2.0 and later) file in use by the server
-running the BASE web application.
-
+running the BASE web application must be available when compiling
+se.lu.thep.affymetrix.jar.
 
 == 2. Compilation and installation from a subversion tree ==