Changeset 277


Ignore:
Timestamp:
May 21, 2007, 7:51:14 PM (16 years ago)
Author:
Peter Johansson
Message:

some lippstick refs #45

File:
1 edited

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  • trunk/se/lu/thep/affymetrix/README

    r276 r277  
    6464`apt-probeset-summarize` provides several methods (see Affymetrix home
    6565page). Here we use the method given with option flag `--option
    66 plier-mm`.
     66plier-mm`. For more information regarding the Plier algorithm please
     67refer to the Affymetrix home page.
    6768
    6869What is required to use the these plug-ins for BASE? The "BASE
     
    7071http://base.thep.lu.se/chrome/site/doc/user/getting_started.html
    7172
    72 1) You need to install the plug-in and make BASE aware of the new
    73    plugin, see INSTALL for instruction for installation
    74    instructions.
     73  1. You need to install the plug-in and make BASE aware of the new
     74     plugin, see INSTALL for instruction for installation
     75     instructions.
    7576
    76 2) You need to import probe set information into BASE (reporter
    77    information), i.e. import AffyChip_annot.csv into BASE. This is
    78    only needed to do once, and optionally later if reporter
    79    information should be updated. This step can only be performed by a
    80    user with reporter administrative (create) privileges, an ordinary
    81    BASE user does NOT have this privilege.
     77  2. You need to import probe set information into BASE (reporter
     78     information), i.e. import AffyChip_annot.csv into BASE. This is
     79     only needed to do once, and optionally later if reporter
     80     information should be updated. This step can only be performed by a
     81     user with reporter administrative (create) privileges, an ordinary
     82     BASE user does NOT have this privilege.
    8283
    8384    - First you need to create an plug-in configuration for the
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