Changeset 277 for trunk/se/lu/thep/affymetrix/README

Timestamp:

May 21, 2007, 7:51:14 PM (16 years ago)

Author:

Peter Johansson

Message:

some lippstick refs #45

File:

• trunk/se/lu/thep/affymetrix/README (modified) (2 diffs)

trunk/se/lu/thep/affymetrix/README

@@ -64 +64 @@
 `apt-probeset-summarize` provides several methods (see Affymetrix home
 page). Here we use the method given with option flag `--option
-plier-mm`.
+plier-mm`. For more information regarding the Plier algorithm please
+refer to the Affymetrix home page.
 
 What is required to use the these plug-ins for BASE? The "BASE
@@ -70 +71 @@
 http://base.thep.lu.se/chrome/site/doc/user/getting_started.html
 
-1) You need to install the plug-in and make BASE aware of the new
-   plugin, see INSTALL for instruction for installation
-   instructions.
+  1. You need to install the plug-in and make BASE aware of the new
+     plugin, see INSTALL for instruction for installation
+     instructions.
 
-2) You need to import probe set information into BASE (reporter
-   information), i.e. import AffyChip_annot.csv into BASE. This is
-   only needed to do once, and optionally later if reporter
-   information should be updated. This step can only be performed by a
-   user with reporter administrative (create) privileges, an ordinary
-   BASE user does NOT have this privilege.
+  2. You need to import probe set information into BASE (reporter
+     information), i.e. import AffyChip_annot.csv into BASE. This is
+     only needed to do once, and optionally later if reporter
+     information should be updated. This step can only be performed by a
+     user with reporter administrative (create) privileges, an ordinary
+     BASE user does NOT have this privilege.
 
     - First you need to create an plug-in configuration for the