Changeset 293


Ignore:
Timestamp:
May 23, 2007, 2:31:46 PM (16 years ago)
Author:
Peter Johansson
Message:

improved text on PLIER

File:
1 edited

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  • trunk/se/lu/thep/affymetrix/README

    r286 r293  
    7373Affymetrix Power Tools (APT) available at
    7474http://www.affymetrix.com/support/developer/powertools/index.affx.
    75 `apt-probeset-summarize` provides several methods (see Affymetrix home
    76 page). Here we use the method given with option flag `--option
    77 plier-mm`. For more information regarding the Plier algorithm please
    78 refer to the Affymetrix home page.
     75`apt-probeset-summarize` provides several methods and options. For
     76time being there is no way to to set these options through the BASE
     77GUI. The option `plier-mm` is hard-coded into the plug-in, which
     78should be good choice in most situations. In short the option means
     79mismatch probe is used as adjustment for perfect match, quantile
     80normalization is done, and PLIER is used for summarizing probesets.
     81For more information regarding the PLIER algorithm please refer to the
     82Affymetrix home page.
    7983
    8084
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