Changeset 302


Ignore:
Timestamp:
May 24, 2007, 4:07:53 PM (16 years ago)
Author:
Peter Johansson
Message:

changed to log2 base

File:
1 edited

Legend:

Unmodified
Added
Removed
  • trunk/se/lu/thep/affymetrix/Plier.java

    r300 r302  
    412412        for (Map.Entry<Integer,Short> entry : cubecolumn.entrySet()){
    413413          Double x =
    414             new Double(Math.log(Double.parseDouble(data.get(entry.getKey()))));
     414            new Double(Math.log(Double.parseDouble(data.get(entry.getKey())))/
     415                       Math.log(2));
    415416          sbatcher.insert(entry.getValue().shortValue(), position,
    416417                          x.floatValue());
     
    436437    ("PLIER plug-in", "Computes gene expression summary values for " +
    437438     "Affymetrix Genechip data using the Probe Logarithm Intensity " +
    438      "ERror algorithm",
     439     "ERror algorithm. Results are expressed in log2 scale.",
    439440     "Version: MAKESUBSTOFVERSIONNUMBER $Revision$ " +
    440441     "$Date$",
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