Changeset 369


Ignore:
Timestamp:
Aug 2, 2007, 11:13:26 AM (16 years ago)
Author:
dominic
Message:

changed readme.txt character format to ansi

Location:
trunk/uk/ac/ebi/Tab2MageImporter
Files:
2 edited

Legend:

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Removed

  • trunk/uk/ac/ebi/Tab2MageImporter/README.txt

    r368 r369  
    1 
     1Dependencies:
     2--------------------
     3--AnnotationTypeCvImporter Plugin – For loading annotation types. The annotations are can annotate raw bio assays by default.
     4--AffyArrayDesignImproter Plugin – for loading affy array design
     5--Reporter Importer - for loading reporter corresponding to the raw data file
     6--Reporter map importer – for adding features to array design
     7--Raw Data Importer Plugin – loads raw data. This must have a configuration that could import the raw data files.  Required for multi-channel experiments.
    28
    3 Dependencies:
    4 
    5 --------------------
    6 
    7 
    8 
    9 - AnnotationTypeCvImporter Plugin – For loading annotation types. The annotations are can annotate raw bio assays by default.
    10 
    11 
    12 
    13 - AffyArrayDesignImproter Plugin – for loading affy array design
    14 
    15 
    16 
    17 - Reporter Importer - for loading reporter corresponding to the raw data file
    18 
    19 
    20 
    21 - Reporter map importer – for adding features to array design
    22 
    23 
    24 
    25 - Raw Data Importer Plugin – loads raw data. This must have a configuration that could import the raw data files.  Required for multi-channel experiments.
    26 
    27 
    28 
    29 Please ensure that you have used all the plugins above appropriately before running Tab2Mage importer. Further documentation on
    30 
    31 AnnotationTypeCvImporter and AffyArrayDesignImproter plugin is available  on Base2plugin website and for others, please read base2 documentation.
    32 
    33  
     9Please ensure that you have used all the plugins above appropriately before running Tab2Mage importer. Further documentation on??
     10AnnotationTypeCvImporter and AffyArrayDesignImproter plugin is available  on Base2plugin website and for others, please read base2
    3411
    3512Email alert:
    36 
    37 ----------------
    38 
     13---------------
    3914To receive an email alert on the success or failure of your experiment loading,
    4015
    41 
    42 
    4316Windows users:
    44 
     17--------
    4518Your antivirus server and anti spam software may prevent you from sending email messages. This is because they must have been configured to block all application requiring connection to your email sever on port 25 (smtp).
    46 
    47 
    48 
    4919If this happens, you can simply ask your administrator to allow your machine to connect to the email server using port 20.
    50 
    51 
    5220
    5321The email alert should work on a linux / unix and may be mac machines.
    5422
    55 
    56 
    57 AnnotationTypes  and Cv Importer
    58 
     23AnnotationTypes and Cv Importer
    5924----------------------------------------------
    60 
    61  the annotation type and cv loader plugin; uk.ac.ebi. nugo.plugins.CvAnnotationTypeImporter must be defined and configured. Both the     plugin and its configured object must be shared to the user running the Tab2MageImporter.  Defining and configuring the plugin should   be done preferably by the administrator. The administrator should share the configuration to the users as well. Otherwise suitable  plugin configurations cannot be found and the import would fail.
    62 
    63  A naming comparism of the annotation type in the flat file to the annotation type in base2 is actualized. Only non-existing annotation    types are created.
    64 
    65 
     25--the annotation type and cv loader plugin; uk.ac.ebi. nugo.plugins.CvAnnotationTypeImporter must be defined and configured. Both the plugin and its configured object must be shared to the user running the Tab2MageImporter.  Defining and configuring the plugin should be done preferably by the administrator. The administrator should share the configuration to the users as well. Otherwise suitable plugin configurations cannot be found and the import would fail.
     26--A naming comparism of the annotation type in the flat file to the annotation type in base2 is actualized. Only non-existing annotation types are created.
     27--If the plugin name:: uk.ac.ebi. nugo.plugins.CvAnnotationTypeImporter changes, this may affect the Tab2mageimporter plugin. So corresponding changes must be made.
    6628
    6729What is not supported
    68 
    6930----------------------------------
    70 
    7131Pooled experiments are not suppported in this release. It would be supported in future releases.
    72 

  • trunk/uk/ac/ebi/Tab2MageImporter/credit.txt

    r362 r369  
    66Philippe Rocca- Serra for his co -design and expert input.
    77Misha Bayer  <sbrn@scri.ac.uk>, Sajoscha Sauer <sauer@embl.de> and
    8 Charles Girardot <charles.girardot@embl.de> at EMBL, Germany whose code was  used  adn adapted for this tab2mage importer implementation.
     8Charles Girardot <charles.girardot@embl.de> at EMBL, Germany whose code were  used  and adapted for this tab2mage importer implementation.
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