Changeset 372


Ignore:
Timestamp:
Aug 7, 2007, 2:41:28 PM (15 years ago)
Author:
dominic
Message:

updated readme and creit changes

Location:
trunk/uk/ac/ebi/Tab2MageImporter
Files:
2 edited

Legend:

Unmodified
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Removed
  • trunk/uk/ac/ebi/Tab2MageImporter/README.txt

    r369 r372  
    11Dependencies:
    22--------------------
     3-- Base 2.2.1 and above
    34--AnnotationTypeCvImporter Plugin – For loading annotation types. The annotations are can annotate raw bio assays by default.
    4 --AffyArrayDesignImproter Plugin – for loading affy array design
    55--Reporter Importer - for loading reporter corresponding to the raw data file
    66--Reporter map importer – for adding features to array design
    77--Raw Data Importer Plugin – loads raw data. This must have a configuration that could import the raw data files.  Required for multi-channel experiments.
     8-- mail.jar and activation. jar for messaging (included) - you could place these jar files in your tomcat class path (web-inf/lib)
    89
    9 Please ensure that you have used all the plugins above appropriately before running Tab2Mage importer. Further documentation on??
    10 AnnotationTypeCvImporter and AffyArrayDesignImproter plugin is available  on Base2plugin website and for others, please read base2
     10Please ensure that you have used all the plugins above appropriately before running Tab2Mage importer. Further documentation on
     11AnnotationTypeCvImporter and AffyArrayDesignImproter plugin is available  on Base2plugin website and for others, please read base2 documentation.
     12
     13optional
     14-------
     15-- AffyArrayDesignImproter Plugin – for batch uploading affymetrix array designs.  Usefull to upload all array dsign in one go.
    1116
    1217Email alert:
     
    2530--the annotation type and cv loader plugin; uk.ac.ebi. nugo.plugins.CvAnnotationTypeImporter must be defined and configured. Both the plugin and its configured object must be shared to the user running the Tab2MageImporter.  Defining and configuring the plugin should be done preferably by the administrator. The administrator should share the configuration to the users as well. Otherwise suitable plugin configurations cannot be found and the import would fail.
    2631--A naming comparism of the annotation type in the flat file to the annotation type in base2 is actualized. Only non-existing annotation types are created.
    27 --If the plugin name:: uk.ac.ebi. nugo.plugins.CvAnnotationTypeImporter changes, this may affect the Tab2mageimporter plugin. So corresponding changes must be made.
    2832
    2933What is not supported
  • trunk/uk/ac/ebi/Tab2MageImporter/credit.txt

    r369 r372  
    66Philippe Rocca- Serra for his co -design and expert input.
    77Misha Bayer  <sbrn@scri.ac.uk>, Sajoscha Sauer <sauer@embl.de> and
    8 Charles Girardot <charles.girardot@embl.de> at EMBL, Germany whose code were  used  and adapted for this tab2mage importer implementation.
     8Charles Girardot <charles.girardot@embl.de> at EMBL, Germany whose code were  used  and adapted for this tab2mage importer implementation and last but not least the base 2 team at Lund.
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