Changeset 382


Ignore:
Timestamp:
Aug 9, 2007, 4:41:26 PM (14 years ago)
Author:
dominic
Message:

new affy class files and build file

Location:
trunk/uk/ac/ebi/AffyArrayDesignBatchImporter
Files:
3 added
2 deleted
2 edited

Legend:

Unmodified
Added
Removed
  • trunk/uk/ac/ebi/AffyArrayDesignBatchImporter/src/uk/ac/ebi/nugo/plugins/AffyArrayDesignBatchImporter.java

    r376 r382  
    4141import net.sf.basedb.core.plugin.Response;
    4242import uk.ac.ebi.nugo.plugins.lims.AffymetrixFileFormatTypes;
    43 import uk.ac.ebi.nugo.plugins.util.Helper;
    44 import uk.ac.ebi.nugo.plugins.util.ZipUnpacker;
     43import uk.ac.ebi.nugo.plugins.util.AffyHelper;
     44import uk.ac.ebi.nugo.plugins.util.AffyZipUnpacker;
    4545
    4646/**
     
    216216        Unpack Zip files
    217217       */
    218       ZipUnpacker affyArrayDesignUnpacker = new ZipUnpacker(file, user, sc);
     218      AffyZipUnpacker affyArrayDesignUnpacker = new AffyZipUnpacker(file, user, sc);
    219219      affyArrayDesignUnpacker.unpack();
    220220      /*
     
    231231      {
    232232        // get the file extension and filename
    233         String ext= Helper.getFileExtension(affyFile);
     233        String ext= AffyHelper.getFileExtension(affyFile);
    234234       
    235235        //  check for validity against an enum file
     
    253253        String fileName = affyFile.getName();
    254254        String fileNameWithoutExtension = fileName.substring(0, fileName.indexOf("."));
    255               ArrayDesign ad= Helper.getArrayDesign(fileNameWithoutExtension, dc);
     255              ArrayDesign ad= AffyHelper.getArrayDesign(fileNameWithoutExtension, dc);
    256256              //if no array design was found create a new one otherwise
    257257              //skip array design creation
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