Changeset 382
- Timestamp:
- Aug 9, 2007, 4:41:26 PM (15 years ago)
- Location:
- trunk/uk/ac/ebi/AffyArrayDesignBatchImporter
- Files:
-
- 3 added
- 2 deleted
- 2 edited
Legend:
- Unmodified
- Added
- Removed
-
trunk/uk/ac/ebi/AffyArrayDesignBatchImporter/src/uk/ac/ebi/nugo/plugins/AffyArrayDesignBatchImporter.java
r376 r382 41 41 import net.sf.basedb.core.plugin.Response; 42 42 import uk.ac.ebi.nugo.plugins.lims.AffymetrixFileFormatTypes; 43 import uk.ac.ebi.nugo.plugins.util. Helper;44 import uk.ac.ebi.nugo.plugins.util. ZipUnpacker;43 import uk.ac.ebi.nugo.plugins.util.AffyHelper; 44 import uk.ac.ebi.nugo.plugins.util.AffyZipUnpacker; 45 45 46 46 /** … … 216 216 Unpack Zip files 217 217 */ 218 ZipUnpacker affyArrayDesignUnpacker = newZipUnpacker(file, user, sc);218 AffyZipUnpacker affyArrayDesignUnpacker = new AffyZipUnpacker(file, user, sc); 219 219 affyArrayDesignUnpacker.unpack(); 220 220 /* … … 231 231 { 232 232 // get the file extension and filename 233 String ext= Helper.getFileExtension(affyFile);233 String ext= AffyHelper.getFileExtension(affyFile); 234 234 235 235 // check for validity against an enum file … … 253 253 String fileName = affyFile.getName(); 254 254 String fileNameWithoutExtension = fileName.substring(0, fileName.indexOf(".")); 255 ArrayDesign ad= Helper.getArrayDesign(fileNameWithoutExtension, dc);255 ArrayDesign ad= AffyHelper.getArrayDesign(fileNameWithoutExtension, dc); 256 256 //if no array design was found create a new one otherwise 257 257 //skip array design creation
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