Changeset 382

Timestamp:

Aug 9, 2007, 4:41:26 PM (15 years ago)

Author:

dominic

Message:

new affy class files and build file

Location:

trunk/uk/ac/ebi/AffyArrayDesignBatchImporter

Files:

• AffyArrayDesignBatchImporter.jar (modified) (previous)
• build.xml (added)
• src/uk/ac/ebi/nugo/plugins/AffyArrayDesignBatchImporter.java (modified) (4 diffs)
• src/uk/ac/ebi/nugo/plugins/util/AffyHelper.java (added)
• src/uk/ac/ebi/nugo/plugins/util/AffyZipUnpacker.java (added)
• src/uk/ac/ebi/nugo/plugins/util/Helper.java (deleted)
• src/uk/ac/ebi/nugo/plugins/util/ZipUnpacker.java (deleted)

trunk/uk/ac/ebi/AffyArrayDesignBatchImporter/src/uk/ac/ebi/nugo/plugins/AffyArrayDesignBatchImporter.java

@@ -41 +41 @@
 import net.sf.basedb.core.plugin.Response;
 import uk.ac.ebi.nugo.plugins.lims.AffymetrixFileFormatTypes;
-import uk.ac.ebi.nugo.plugins.util.Helper;
-import uk.ac.ebi.nugo.plugins.util.ZipUnpacker;
+import uk.ac.ebi.nugo.plugins.util.AffyHelper;
+import uk.ac.ebi.nugo.plugins.util.AffyZipUnpacker;
 
 /**
@@ -216 +216 @@
         Unpack Zip files
        */
-      ZipUnpacker affyArrayDesignUnpacker = new ZipUnpacker(file, user, sc);
+      AffyZipUnpacker affyArrayDesignUnpacker = new AffyZipUnpacker(file, user, sc);
       affyArrayDesignUnpacker.unpack();
       /*
@@ -231 +231 @@
       {
         // get the file extension and filename
-        String ext= Helper.getFileExtension(affyFile);
+        String ext= AffyHelper.getFileExtension(affyFile);
         
         //  check for validity against an enum file
@@ -253 +253 @@
         String fileName = affyFile.getName();
         String fileNameWithoutExtension = fileName.substring(0, fileName.indexOf("."));
-              ArrayDesign ad= Helper.getArrayDesign(fileNameWithoutExtension, dc);
+              ArrayDesign ad= AffyHelper.getArrayDesign(fileNameWithoutExtension, dc);
               //if no array design was found create a new one otherwise
               //skip array design creation