Changeset 395

Timestamp:

Aug 15, 2007, 11:47:00 AM (16 years ago)

Author:

dominic

Message:

updated jar files and constant class

Location:

trunk/uk/ac/ebi/AnnotationTypeCvImporter

Files:

• AnnotationTypeCvImporter.jar (modified) (previous)
• ebi-plugins-utils.jar (modified) (previous)
• src/uk/ac/ebi/nugo/common/Helper.java (modified) (1 diff)
• src/uk/ac/ebi/nugo/common/Tab2MageConstants.java (added)
• src/uk/ac/ebi/nugo/plugins/AnnotationTypeCvImporter.java (modified) (4 diffs)

trunk/uk/ac/ebi/AnnotationTypeCvImporter/src/uk/ac/ebi/nugo/common/Helper.java

@@ -79 +79 @@
   public static void displayParameterHeader(Set<String> parameterSectionHeader)
    {
-      System.out.println("+++++ List all parameter header  +++++");
-      for (String paramHyb : parameterSectionHeader)
+      for (String paramHyb : parameterSectionHeader)
       {
         System.out.println(paramHyb+"\n");

trunk/uk/ac/ebi/AnnotationTypeCvImporter/src/uk/ac/ebi/nugo/plugins/AnnotationTypeCvImporter.java

@@ -35 +35 @@
 import net.sf.basedb.util.parser.Mapper;
 import net.sf.basedb.util.Values;
-import uk.ac.ebi.nugo.plugins.util.ValueFormatter;
 
 
@@ -512 +511 @@
           if (category != null) 
           {
-            List<String> annotationTypeCategory= 
-              ValueFormatter.getList(columnMappings.get("categoryColumnMapping").getValue(data),";");
+            List<String> annotationTypeCategory= Values.getList(columnMappings.get("categoryColumnMapping").getValue(data),";");
             
             for (int i=0, z=annotationTypeCategory.size(); i<z;i++)
@@ -542 +540 @@
           if (enumeration)
             annotationType.setValues
-              (ValueFormatter.getList(columnMappings.get("cvValueColumnMapping").getValue(data),";"));
+              (Values.getList(columnMappings.get("cvValueColumnMapping").getValue(data),";"));
           
           itemType= columnMappings.get("itemTypeColumnMapping").getValue(data);
@@ -548 +546 @@
           {
             Item[] items=Item.values();
-            List<String> itemTypes=ValueFormatter.getList(columnMappings.get("itemTypeColumnMapping").getValue(data),separator);  
+            List<String> itemTypes=Values.getList(columnMappings.get("itemTypeColumnMapping").getValue(data),separator);  
             for (String itemType: itemTypes)
             {