Changeset 398


Ignore:
Timestamp:
Aug 15, 2007, 11:58:46 AM (14 years ago)
Author:
dominic
Message:

update text files

Location:
trunk/uk/ac/ebi/Tab2MageImporter
Files:
2 edited

Legend:

Unmodified
Added
Removed
  • trunk/uk/ac/ebi/Tab2MageImporter/README.txt

    r393 r398  
    33---------------------------
    44
    5 This plugin imports raw data files and an experiment meta-data in the tab2mage specification into base. The tab2mage specification is provided by the microarray (link) informatics team at the EBI, Cambridge. The imported experiment can later be exported by the corresponding tab2mage export plugin. (link).
     5This plugin imports raw data files and an experiment meta-data in the tab2mage specification into base 2. The tab2mage specification is provided by the microarray (link) informatics team at the EBI, Cambridge. The imported experiment can later be exported by the corresponding tab2mage export plugin. (link).
    66
    77The entry point for this plugin in base is the detail view page of an experiment. Hence, the user needs to create an experiment first and execute the plugin from this page by clicking on the import tab. The displayed wizards asked for the zip file containing the meta- data i.e. tab2mage file and the raw data files. Furthermore, the user’s  email server name could be specified to received notices of success or failure of the uploading or can be omitted to receive no message. 
     
    5757--------------------
    5858  --Base 2.2.1 and above
    59   --AnnotationTypeCvImporter Plugin – For loading annotation types. The annotations are can annotate raw bio assays by default.
     59  --AnnotationTypeCvImporter Plugin – For loading annotation types. This must have a configuration that could import an annotation types (.txt) file.
    6060  --Reporter Importer - for loading reporter corresponding to the raw data file
    6161  --Reporter map importer – for adding features to array design
    6262  --Raw Data Importer Plugin – loads raw data. This must have a configuration that could import the raw data files.  Required for multi-channel experiments. The definition for the plug-in is available by default. The configuration should be done by administrator and shared to everyone or a suitable group that all the target users belong.
    63   -- if  you want to use messaging, mail.jar and activation. jar for messaging is required- these jar files should be downloaded and copied to your tomcat class path ( /webapps/(base)/web-inf/lib).
     63  -- if  you want to use messaging, mail.jar and activation. jar for messaging is required- these jar files should be downloaded and copied to your base iinstallatiion claass path  /web-inf/lib folder.
    6464
    6565  Please ensure that you have used all the plugins above appropriately before running Tab2Mage importer. Further information on AnnotationTypeCvImporter is available  on Base2plugin website and for others, please read base2 documentation.
  • trunk/uk/ac/ebi/Tab2MageImporter/credit.txt

    r372 r398  
    66Philippe Rocca- Serra for his co -design and expert input.
    77Misha Bayer  <sbrn@scri.ac.uk>, Sajoscha Sauer <sauer@embl.de> and
    8 Charles Girardot <charles.girardot@embl.de> at EMBL, Germany whose code were  used  and adapted for this tab2mage importer implementation and last but not least the base 2 team at Lund.
     8Charles Girardot <charles.girardot@embl.de> at EMBL, Germany whose code were  used  and adapted for this tab2mage importer implementation and last but not least the base 2 team at Lund, keep up the good work guys.
Note: See TracChangeset for help on using the changeset viewer.