Changeset 436


Ignore:
Timestamp:
Sep 27, 2007, 12:22:01 PM (14 years ago)
Author:
dominic
Message:

added updated annotation type and cv config file.

File:
1 edited

Legend:

Unmodified
Added
Removed
  • trunk/uk/ac/ebi/AnnotationTypeCvImporter/annotationtypecvimporter.xml

    r424 r436  
    22<!DOCTYPE configfile SYSTEM "plugin-configuration-file.dtd"><configfile>
    33  <configuration pluginClassName="uk.ac.ebi.nugo.plugins.AnnotationTypeCvImporter">
    4     <configname>New Nugo CV Config</configname>
     4    <configname>Sample ATCV Config</configname>
    55    <description />
    6     <parameter>
    7       <name>maxDataColumns</name>
    8       <label>Max data columns</label>
    9       <description>The maximum number of columns for a line to be counted as a data line, or 0 to allow any number of columns.</description>
    10       <class />
    11       <value />
    12     </parameter>
    136    <parameter>
    147      <name>dataHeaderRegexp</name>
     
    3326    </parameter>
    3427    <parameter>
     28      <name>multiplicityColumnMapping</name>
     29      <label>Multiplicity</label>
     30      <description>Mapping that picks the annotation type's multiplicity from the data columns. For example: \Multiplicity\</description>
     31      <class>java.lang.String</class>
     32      <value>\6\</value>
     33    </parameter>
     34    <parameter>
    3535      <name>dataSplitterRegexp</name>
    3636      <label>Data splitter</label>
     
    3838      <class>java.lang.String</class>
    3939      <value>\t</value>
    40     </parameter>
    41     <parameter>
    42       <name>multiplicityColumnMapping</name>
    43       <label>Multiplicity</label>
    44       <description>Mapping that picks the annotation type's multiplicity from the data columns. For example: \Multiplicity\</description>
    45       <class>java.lang.String</class>
    46       <value>\6\</value>
    4740    </parameter>
    4841    <parameter>
     
    7568    </parameter>
    7669    <parameter>
    77       <name>minDataColumns</name>
    78       <label>Min data columns</label>
    79       <description>The minimum number of columns for a line to be counted as a data line.</description>
    80       <class />
    81       <value />
    82     </parameter>
    83     <parameter>
    84       <name>ignoreRegexp</name>
    85       <label>Ignore</label>
    86       <description>A regular expression that matches any line that should be ignored. For example, ignore lines starting with #: ^#.*</description>
    87       <class />
    88       <value />
    89     </parameter>
    90     <parameter>
    9170      <name>categoryColumnMapping</name>
    9271      <label>Category Name</label>
     
    11796    </parameter>
    11897    <parameter>
    119       <name>dataFooterRegexp</name>
    120       <label>Data footer</label>
    121       <description>A regular expression that matches the first line of non-data after the data lines. For example: __END_OF_DATA__</description>
    122       <class />
    123       <value />
    124     </parameter>
    125     <parameter>
    12698      <name>defaultValueColumnMapping</name>
    12799      <label>Default value</label>
     
    129101      <class>java.lang.String</class>
    130102      <value>\8\</value>
    131     </parameter>
    132     <parameter>
    133       <name>headerRegexp</name>
    134       <label>Header</label>
    135       <description>A regular expression that matches a header line and extracts the name and a value parts. For example, split on equal symbol: (.+)=(.*)</description>
    136       <class />
    137       <value />
    138103    </parameter>
    139104    <parameter>
Note: See TracChangeset for help on using the changeset viewer.