Changeset 450


Ignore:
Timestamp:
Oct 30, 2007, 4:52:05 PM (14 years ago)
Author:
dominic
Message:
 
File:
1 edited

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  • trunk/uk/ac/ebi/Tab2MageImporter/tab2mage- genepix.txt

    r406 r450  
    1515volume  1
    1616issue 1
    17 pages 112-122                                                   
    18 year  2005                                                   
     17pages 112-122
     18year  2005
    1919
     20Protocol section
     21accession text  type  name  parameters                  P-TOXM-1  "All chemicals tested were supplied by XXX" grow  Contaminant doses and mixture preparation medium;CO2;antibiotics
     22P-TOXM-2  "RNA was isolated using a FastPrep instrument (Q-Biogene, Irvine USA) and Rneasy reagents (Qiagen)" extraction  RNA isolation and clean-up
     23P-TOXM-3  text  labeling  cDNA synthesis and labeling
     24P-TOXM-4  text  hybridization Hybridization temperature(degree_C) ; duration(hr)
     25P-TOXM-5  text  scanning  Scanning and Image analysis
    2026
    21 
    22 Protocol section                                                     
    23 accession text  type  name  parameters                                             
    24 P-TOXM-1  "All chemicals tested were supplied by XXX" grow  Contaminant doses and mixture preparation medium;CO2;antibiotics                                             
    25 P-TOXM-2  "RNA was isolated using a FastPrep instrument (Q-Biogene, Irvine USA) and Rneasy reagents (Qiagen)" extraction  RNA isolation and clean-up                                               
    26 P-TOXM-3  text  labeling  cDNA synthesis and labeling                                               
    27 P-TOXM-4  text  hybridization Hybridization temperature(degree_C) ; duration(hr)                                             
    28 P-TOXM-5  text  scanning  Scanning and Image analysis                                               
    29 
    30 Hybridization section                                                     
     27Hybridization section
    3128File[raw] Array[accession]  FactorValue[treatment]  FactorValue[compound] FactorValue[dose] FactorValue[exposure (hr)]  BioSource BioMaterialCharacteristics[Organism]  BioMaterialCharacteristics[OrganismPart]  BioMaterialCharacteristics[Cell type] BioMaterialCharacteristics[StrainOrLine]    Protocol[grow]  Parameter[medium] Parameter[CO2]  Parameter[antibiotics]  Extract Protocol[Extraction]  LabeledExtract  Protocol[Labeling]  Dye Hybridization Protocol[hybridization] Parameter[temperature(degree_C)]  Parameter[duration(hr)] Scan  Protocol[scanning]  Sample
    3229file1.gpr A-MEXP-XXXX   Propyl-paraben  IC50  24  bs1 Homo sapiens  Liver hepatocyte  HepG2   P-TOXM-1  DMEM  5%  penicillin  e1  P-TOXM-2  l1  P-TOXM-3  Cy5 h1  P-TOXM-4  40  40  scan1 P-TOXM-5  s1
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