Changeset 450 for trunk/uk/ac/ebi/Tab2MageImporter/tab2mage- genepix.txt

Timestamp:

Oct 30, 2007, 4:52:05 PM (15 years ago)

Author:

dominic

Message:

 

File:

• trunk/uk/ac/ebi/Tab2MageImporter/tab2mage- genepix.txt (modified) (1 diff)

trunk/uk/ac/ebi/Tab2MageImporter/tab2mage- genepix.txt

@@ -15 +15 @@
 volume  1
 issue 1
-pages 112-122                                                   
-year  2005                                                    
+pages 112-122
+year  2005
 
+Protocol section
+accession text  type  name  parameters                  P-TOXM-1  "All chemicals tested were supplied by XXX" grow  Contaminant doses and mixture preparation medium;CO2;antibiotics
+P-TOXM-2  "RNA was isolated using a FastPrep instrument (Q-Biogene, Irvine USA) and Rneasy reagents (Qiagen)" extraction  RNA isolation and clean-up
+P-TOXM-3  text  labeling  cDNA synthesis and labeling
+P-TOXM-4  text  hybridization Hybridization temperature(degree_C) ; duration(hr)
+P-TOXM-5  text  scanning  Scanning and Image analysis
 
-
-Protocol section                                                      
-accession text  type  name  parameters                                              
-P-TOXM-1  "All chemicals tested were supplied by XXX" grow  Contaminant doses and mixture preparation medium;CO2;antibiotics                                              
-P-TOXM-2  "RNA was isolated using a FastPrep instrument (Q-Biogene, Irvine USA) and Rneasy reagents (Qiagen)" extraction  RNA isolation and clean-up                                                
-P-TOXM-3  text  labeling  cDNA synthesis and labeling                                               
-P-TOXM-4  text  hybridization Hybridization temperature(degree_C) ; duration(hr)                                              
-P-TOXM-5  text  scanning  Scanning and Image analysis                                               
-
-Hybridization section                                                     
+Hybridization section
 File[raw] Array[accession]  FactorValue[treatment]  FactorValue[compound] FactorValue[dose] FactorValue[exposure (hr)]  BioSource BioMaterialCharacteristics[Organism]  BioMaterialCharacteristics[OrganismPart]  BioMaterialCharacteristics[Cell type] BioMaterialCharacteristics[StrainOrLine]    Protocol[grow]  Parameter[medium] Parameter[CO2]  Parameter[antibiotics]  Extract Protocol[Extraction]  LabeledExtract  Protocol[Labeling]  Dye Hybridization Protocol[hybridization] Parameter[temperature(degree_C)]  Parameter[duration(hr)] Scan  Protocol[scanning]  Sample
 file1.gpr A-MEXP-XXXX   Propyl-paraben  IC50  24  bs1 Homo sapiens  Liver hepatocyte  HepG2   P-TOXM-1  DMEM  5%  penicillin  e1  P-TOXM-2  l1  P-TOXM-3  Cy5 h1  P-TOXM-4  40  40  scan1 P-TOXM-5  s1