Changeset 450 for trunk/uk/ac/ebi/Tab2MageImporter/tab2mage- genepix.txt
- Timestamp:
- Oct 30, 2007, 4:52:05 PM (15 years ago)
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-
- 1 edited
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trunk/uk/ac/ebi/Tab2MageImporter/tab2mage- genepix.txt
r406 r450 15 15 volume 1 16 16 issue 1 17 pages 112-122 18 year 2005 17 pages 112-122 18 year 2005 19 19 20 Protocol section 21 accession text type name parameters P-TOXM-1 "All chemicals tested were supplied by XXX" grow Contaminant doses and mixture preparation medium;CO2;antibiotics 22 P-TOXM-2 "RNA was isolated using a FastPrep instrument (Q-Biogene, Irvine USA) and Rneasy reagents (Qiagen)" extraction RNA isolation and clean-up 23 P-TOXM-3 text labeling cDNA synthesis and labeling 24 P-TOXM-4 text hybridization Hybridization temperature(degree_C) ; duration(hr) 25 P-TOXM-5 text scanning Scanning and Image analysis 20 26 21 22 Protocol section 23 accession text type name parameters 24 P-TOXM-1 "All chemicals tested were supplied by XXX" grow Contaminant doses and mixture preparation medium;CO2;antibiotics 25 P-TOXM-2 "RNA was isolated using a FastPrep instrument (Q-Biogene, Irvine USA) and Rneasy reagents (Qiagen)" extraction RNA isolation and clean-up 26 P-TOXM-3 text labeling cDNA synthesis and labeling 27 P-TOXM-4 text hybridization Hybridization temperature(degree_C) ; duration(hr) 28 P-TOXM-5 text scanning Scanning and Image analysis 29 30 Hybridization section 27 Hybridization section 31 28 File[raw] Array[accession] FactorValue[treatment] FactorValue[compound] FactorValue[dose] FactorValue[exposure (hr)] BioSource BioMaterialCharacteristics[Organism] BioMaterialCharacteristics[OrganismPart] BioMaterialCharacteristics[Cell type] BioMaterialCharacteristics[StrainOrLine] Protocol[grow] Parameter[medium] Parameter[CO2] Parameter[antibiotics] Extract Protocol[Extraction] LabeledExtract Protocol[Labeling] Dye Hybridization Protocol[hybridization] Parameter[temperature(degree_C)] Parameter[duration(hr)] Scan Protocol[scanning] Sample 32 29 file1.gpr A-MEXP-XXXX Propyl-paraben IC50 24 bs1 Homo sapiens Liver hepatocyte HepG2 P-TOXM-1 DMEM 5% penicillin e1 P-TOXM-2 l1 P-TOXM-3 Cy5 h1 P-TOXM-4 40 40 scan1 P-TOXM-5 s1
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