Changeset 5003

Timestamp:

Oct 4, 2018, 10:52:04 AM (4 years ago)

Author:

Nicklas Nordborg

Message:

References #1054: Even more functionality in the Flagged alignment wizard

If we mark a 'Specimen' with DoNotUse we also need to find other sample child items.

File:

• extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/servlet/GenotypeServlet.java (modified) (1 diff)

extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/servlet/GenotypeServlet.java

@@ -1058 +1058 @@
     Restriction byName = Restrictions.like(Hql.property("name"), Expressions.string(item.getName()+".%"));
     
+    // Find child samples if the item is a sample (eg. specimen)
+    if (item.getType() == Item.SAMPLE)
+    {
+      ItemQuery<Sample> sampleQuery = Sample.getQuery();
+      sampleQuery.setIncludes(Reggie.INCLUDE_IN_CURRENT_PROJECT);
+      sampleQuery.restrict(byName);
+      allItems.addAll(sampleQuery.list(dc));
+    }
+    
     // Find child extracts
     ItemQuery<Extract> extractQuery = Extract.getQuery();