Ignore:
Timestamp:
Dec 3, 2007, 5:14:11 PM (14 years ago)
Author:
mbayer
Message:
  • have tidied up the interface to the point where it is usable as it is
  • have provided defaults for every field in every form for testing
File:
1 moved

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  • branches/uk_ac_ebi_Tab2MageImporter/html/hybridizations.html

    r510 r511  
    33<head>
    44<meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1">
    5 <title>Tab2MAGE Importer -- Experiment Configuration</title>
     5<title>Tab2MAGE Importer -- Hybridizations</title>
    66
    7 <style type="text/css">   
    8 table   {border-color: #6E94B7;border-style: solid; border-width: 1px;border-collapse: collapse}
    9 tr {border-color: #6E94B7;border-style: solid;border-width: 1px}
    10 </style>
     7<link rel="stylesheet" type="text/css" href="styles.css" />
    118
    129</head>
    1310<body>
    1411
    15 <h2>Tab2MAGE Importer -- Experiment Configuration</h2>
     12<h2>Tab2MAGE Importer -- Your Hybridizations</h2>
     13Page 3 of 3
     14<p>
    1615
    17 Please configure your experiment for upload by answering the questions below.
    18 <br>
    19 The answers you provide will be used to automatically create a new experiment in BASE and your raw data will be imported
    20 into this.
    21 <p>
    2216<form>
     17
    2318<table cellpadding="15">
    24 
    25 
    26   <tr>
    27   <td>Please select the zip file on your local disk that contains the data files for import:</td>
    28     <td><INPUT type="file" name="parameter:zipFile" size="50"></td>
    29   </tr>
    30 
    3119
    3220  <!-- question 1 -->
    3321  <tr style="border-color: #6E94B7;border-style: solid;border-width: 1px">
    34     <td>Please select the microarray platform used in the experiment:</td>
    35     <td>
     22    <td class="boldText">Microarray platform used:</td>
     23    <td class="input">
    3624    <select name="parameter:platform">
    3725    </select>
     
    4129  <!-- question 2 -->
    4230  <tr>
    43     <td>Please enter the name of the experimental organism:</td>
    44     <td><input type="text" size="50" name="parameter:organism"/></td>
     31    <td class="boldText">Name of the experimental organism:</td>
     32    <td class="input"><input type="text" size="60" name="parameter:organism"/></td>
    4533  </tr>
    4634
    4735  <!-- question 3 -->
    4836  <tr>
    49     <td>How many different arrays designs were used ?</td>
    50     <td><input type="text" size="3" name="parameter:numDesigns"/></td>
     37    <td class="boldText">Number of different arrays designs used:</td>
     38    <td class="input"><input type="text" size="3" name="parameter:numDesigns"/></td>
    5139  </tr>
    5240
    5341  <!-- question 4 -->
    5442  <tr>
    55     <td>Was dye-swap used?</td>
    56     <td>yes <input type="radio" name="parameter:dyeswap" value="yes"> no <input type="radio" name="parameter:dyeswap" value="no">
     43    <td class="boldText">Was dye-swap used?</td>
     44    <td class="input">yes <input type="radio" name="parameter:dyeswap" value="yes"> no <input type="radio" name="parameter:dyeswap" value="no">
    5745    <br>
    5846    </td>
     
    6149  <!-- question 5 -->
    6250  <tr>
    63     <td>Was a reference sample used?</td>
    64     <td>yes <input type="radio" name="parameter:refSample" value="yes"> no <input type="radio" name="parameter:refSample"
     51    <td class="boldText">Was a reference sample used?</td>
     52    <td class="input">yes <input type="radio" name="parameter:refSample" value="yes"> no <input type="radio" name="parameter:refSample"
    6553      value="no"></td>
    6654  </tr>
     
    6856  <!-- question 6 -->
    6957  <tr>
    70     <td>How many study groups (= treatment groups) were defined in the experiment?</td>
    71     <td><input type="text" size="3" name="parameter:numTreatments"/></td>
     58    <td class="boldText">Number of treatments used:</td>
     59    <td class="input"><input type="text" size="3" name="parameter:numTreatments"/></td>
    7260  </tr>
    7361
    7462  <!-- question 7 -->
    7563  <tr>
    76     <td>What were the study factors (= independent variables /experimental factors) ?
    77     <p>List Study Factors and Value ranges using the following format (one per line):<br>
    78     Factor 1(value1,value2,...valueN)<br>
    79     Factor 2(value1,value2,...valueN)
    80     <p>Example: <br>Compound(aspirin,ibuprofen,acetaminophen)
    81                   <br>Dose(control,low,medium,high)
     64    <td class="boldText">Please list your experimental factors and value ranges using the following format (one per line):<br>
     65    <i>Factor 1(value1,value2,...valueN)<br>
     66    Factor 2(value1,value2,...valueN)</i>
     67    <p>Example: <i><br>Compound(aspirin,ibuprofen,acetaminophen)
     68                  <br>Dose(control,low,medium,high)</i>
    8269    </td>
    83     <td><textarea rows="8" cols="40" name="parameter:expFactors"></textarea></td>
     70    <td class="input"><textarea rows="7" cols="40" name="parameter:expFactors"></textarea></td>
    8471  </tr>
    8572
    8673  <!-- question 8 -->
    8774  <tr>
    88     <td>How many subjects per study group (i.e. number of biological replicates)?</td>
    89     <td><input type="text" size="3" name="parameter:numReplicates"/></td>
     75    <td  class="boldText">Number of subjects per group (i.e. number of biological replicates):</td>
     76    <td class="input"><input type="text" size="3" name="parameter:numReplicates"/></td>
    9077  </tr>
    9178  <!-- question 9 -->
    9279  <tr>
    93     <td>List all target tissues (as a comma separated list).<br>
     80    <td class="boldText">List all target tissues (as a comma separated list).<br>
    9481    Example: liver,heart,adipose tissue
    9582    </td>
    96     <td><textarea rows="8" cols="40" name="parameter:tissues"></textarea></td>
     83    <td class="input"><textarea rows="2" cols="40" name="parameter:tissues"></textarea></td>
    9784  </tr>
    9885  <!-- question 10 -->
    9986  <tr>
    100     <td>Were samples pooled?</td>
    101     <td>yes <input type="radio" name="parameter:pooling" value="yes"> no <input type="radio" name="parameter:pooling" value="no">
     87    <td class="boldText">Were samples pooled?</td>
     88    <td class="input">yes <input type="radio" name="parameter:pooling" value="yes"> no <input type="radio" name="parameter:pooling" value="no">
    10289    </td>
    10390  </tr>
    104 
     91 
     92 
     93  <!-- file upload -->
    10594  <tr>
    106     <td colspan="2" align="center">
    107     <p><input type="submit" value="Continue" name="continue"/> &nbsp; &nbsp; &nbsp;
    108     </p>
    109 
    110     <input type="submit" value="Cancel" name="cancel" />
    111     </form>
    112     </td>
     95  <td class="boldText">Please select the zip file on your local disk that contains the data files for import:</td>
     96    <td class="input"><INPUT type="file" name="parameter:zipFile" size="50"></td>
    11397  </tr>
    11498
     99</table>
    115100
     101<p>
     102<table class="noBorder" width="100%">
     103<tr class="noBorder" ><td class="centered">
     104<input type="submit"  value="Run Import"/>
     105</td>
     106</tr>
    116107</table>
    117108
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