- Timestamp:
- Dec 3, 2007, 5:14:11 PM (16 years ago)
- File:
-
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branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/hybridizations.jsp
r497 r511 4 4 <%@ page import="java.util.*"%> 5 5 6 <jsp:useBean id="inputDataBean" class="uk.ac.ebi.nugo.plugins.DataBean" scope="session" />6 <jsp:useBean id="inputDataBean" class="uk.ac.ebi.nugo.plugins.DataBean" scope="session" /> 7 7 <!-- submits the form data back to the bean assuming that each form element is matched to a variable in the bean by the same name --> 8 <jsp:setProperty name="inputDataBean" property="*" />8 <jsp:setProperty name="inputDataBean" property="*" /> 9 9 10 10 11 11 <html> 12 12 <head> 13 <link rel="stylesheet" type="text/css" href="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/styles.css" /> 13 14 </head> 14 15 <body> 16 15 17 16 18 <% … … 20 22 %> 21 23 22 <h2>Tab2MAGE Importer -- Hybridizations Configuration</h2>23 24 < form action="../../../../../../common/plugin/index.jsp" method="post">25 < input type="hidden" name="ID" value="<%=ID%>">26 <input type="hidden" name=" cmd" value="SetParameters">27 <input type="hidden"name="requestID" value="<%=requestID%>">28 <input type="hidden" name="parameter:experimentName" value="<%=inputDataBean.getExperimentName()%>">29 <input type="hidden" name="parameter:treatmentProtocol" value="<%=inputDataBean.getTreatmentProtocol()%>"> 24 <h2>Tab2MAGE Importer -- Your Hybridizations</h2> 25 Page 3 of 3 26 <p> 27 <form action="<%= request.getContextPath()%>/common/plugin/index.jsp" method="post"> 28 <input type="hidden" name="ID" value="<%=ID%>"> <input type="hidden" name="cmd" value="SetParameters"> 29 <input type="hidden"name="requestID" value="<%=requestID%>"> 30 <input type="hidden" name="parameter:experimentName" value="<%=inputDataBean.getExperimentName()%>"> 31 <input type="hidden" name="parameter:treatmentProtocol" value="<%=inputDataBean.getTreatmentProtocol()%>"> 30 32 31 33 <table cellpadding="15"> 34 32 35 <!-- question 1 --> 33 36 <tr style="border-color: #6E94B7;border-style: solid;border-width: 1px"> 34 <td >Please select the microarray platform used in the experiment:</td>35 <td ><select name="parameter:platform">36 <option>Affymetrix</option>37 <option selected="selected">Genepix</option>37 <td class="boldText">Microarray platform used:</td> 38 <td class="input"><select name="parameter:platform"> 39 <option >Genepix</option> 40 <option >Affymetrix</option> 38 41 </select></td> 39 42 </tr> 43 44 <!-- question 2 --> 45 <tr> 46 <td class="boldText">Name of the experimental organism:</td> 47 <td class="input"><input type="text" size="60" name="parameter:organism" value="barley"/></td> 48 </tr> 49 50 <!-- question 3 --> 51 <tr> 52 <td class="boldText">Number of different arrays designs used:</td> 53 <td class="input"><input type="text" size="3" name="parameter:numDesigns" value="1"/></td> 54 </tr> 55 56 <!-- question 4 --> 57 <tr> 58 <td class="boldText">Was dye-swap used?</td> 59 <td class="input">yes <input type="radio" name="parameter:dyeswap" value="yes"> no <input type="radio" 60 name="parameter:dyeswap" value="no" checked="checked"> <br> 61 </td> 62 </tr> 63 64 <!-- question 5 --> 65 <tr> 66 <td class="boldText">Was a reference sample used?</td> 67 <td class="input">yes <input type="radio" name="parameter:refSample" value="yes" > no <input type="radio" 68 name="parameter:refSample" value="no" checked="checked"></td> 69 </tr> 70 71 <!-- question 6 --> 72 <tr> 73 <td class="boldText">Number of treatments used:</td> 74 <td class="input"><input type="text" size="3" name="parameter:numTreatments" value="2"/></td> 75 </tr> 76 77 <!-- question 7 --> 78 <tr> 79 <td class="boldText">Please list your experimental factors and value ranges using the following format (one per 80 line):<br> 81 <i>Factor 1(value1,value2,...valueN)<br> 82 Factor 2(value1,value2,...valueN)</i> 83 <p>Example: <i><br> 84 Compound(aspirin,ibuprofen,acetaminophen) <br> 85 Dose(control,low,medium,high)</i> 86 </td> 87 <td class="input"><textarea rows="7" cols="40" name="parameter:expFactors">Factor 1(value1,value2,...valueN)<br>Factor 2(value1,value2,...valueN)</textarea></td> 88 </tr> 89 90 <!-- question 8 --> 91 <tr> 92 <td class="boldText">Number of subjects per group (i.e. number of biological replicates):</td> 93 <td class="input"><input type="text" size="3" name="parameter:numReplicates" value="3"/></td> 94 </tr> 40 95 41 </table> 96 <!-- question 9 --> 97 <tr> 98 <td class="boldText">List all target tissues (as a comma separated list).<br> 99 Example: liver,heart,adipose tissue</td> 100 <td class="input"><textarea rows="2" cols="40" name="parameter:tissues">tissues1,tissue2</textarea></td> 101 </tr> 102 103 <!-- question 10 --> 104 <tr> 105 <td class="boldText">Were samples pooled?</td> 106 <td class="input">yes <input type="radio" name="parameter:pooling" value="yes"> no <input type="radio" 107 name="parameter:pooling" value="no" checked="checked"></td> 108 </tr> 42 109 43 <input type="submit" value="Continue" /> 110 111 <!-- file upload --> 112 <tr> 113 <td class="boldText">Please select the zip file on your local disk that contains the data files for import:</td> 114 <td class="input"><INPUT type="file" name="parameter:zipFile" size="50" value="test.txt"></td> 115 </tr> 116 117 </table> 118 119 <p> 120 <table class="noBorder" width="100%"> 121 <tr class="noBorder"> 122 <td class="centered"><input type="submit" value="Run Import" /></td> 123 </tr> 124 </table> 125 126 44 127 </form> 45 128
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