Ignore:
Timestamp:
Dec 4, 2007, 3:46:31 PM (14 years ago)
Author:
mbayer
Message:
  • have tied the interface to the importer plugin class now -- all parameters get picked up fine by the plugin
File:
1 edited

Legend:

Unmodified
Added
Removed
  • branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/hybridizations.jsp

    r511 r512  
    2727<form action="<%= request.getContextPath()%>/common/plugin/index.jsp" method="post">
    2828<input type="hidden" name="ID" value="<%=ID%>"> <input type="hidden" name="cmd" value="SetParameters">
    29   <input type="hidden"name="requestID" value="<%=requestID%>">
    30   <input type="hidden" name="parameter:experimentName" value="<%=inputDataBean.getExperimentName()%>">
    31   <input type="hidden" name="parameter:treatmentProtocol" value="<%=inputDataBean.getTreatmentProtocol()%>">
     29<input type="hidden"name="requestID" value="<%=requestID%>">
     30<!-- these are the parameters from the input pages; need to pick them up individually from the bean here; ugly as hell but can't be done any other way -->
     31<input type="hidden" name="parameter:domain" value="<%=inputDataBean.getDomain()%>">
     32<input type="hidden" name="parameter:accession" value="<%=inputDataBean.getAccession()%>">
     33<input type="hidden" name="parameter:qualityControl" value="<%=inputDataBean.getQualityControl()%>">
     34<input type="hidden" name="parameter:experimentalDesign" value="<%=inputDataBean.getExperimentalDesign()%>">
     35<input type="hidden" name="parameter:experimentName" value="<%=inputDataBean.getExperimentName()%>">
     36<input type="hidden" name="parameter:description" value="<%=inputDataBean.getDescription()%>">
     37<input type="hidden" name="parameter:releaseDate" value="<%=inputDataBean.getReleaseDate()%>">
     38<input type="hidden" name="parameter:submissionDate" value="<%=inputDataBean.getSubmissionDate()%>">
     39<input type="hidden" name="parameter:submitter" value="<%=inputDataBean.getSubmitter()%>">
     40<input type="hidden" name="parameter:organization" value="<%=inputDataBean.getOrganization()%>">
     41<input type="hidden" name="parameter:publicationTitle" value="<%=inputDataBean.getPublicationTitle()%>">
     42<input type="hidden" name="parameter:authors" value="<%=inputDataBean.getAuthors()%>">
     43<input type="hidden" name="parameter:journal" value="<%=inputDataBean.getJournal()%>">
     44<input type="hidden" name="parameter:volume" value="<%=inputDataBean.getVolume()%>">
     45<input type="hidden" name="parameter:issue" value="<%=inputDataBean.getIssue()%>">
     46<input type="hidden" name="parameter:pages" value="<%=inputDataBean.getPages()%>">
     47<input type="hidden" name="parameter:year" value="<%=inputDataBean.getYear()%>">
     48<input type="hidden" name="parameter:pubmedId" value="<%=inputDataBean.getPubmedId()%>">
     49<input type="hidden" name="parameter:treatmentProtocol" value="<%=inputDataBean.getTreatmentProtocol()%>">
     50<input type="hidden" name="parameter:extractionProtocol" value="<%=inputDataBean.getExtractionProtocol()%>">
     51<input type="hidden" name="parameter:labelingProtocol" value="<%=inputDataBean.getLabelingProtocol()%>">
     52<input type="hidden" name="parameter:hybridizationProtocol" value="<%=inputDataBean.getHybridizationProtocol()%>">
     53<input type="hidden" name="parameter:scanningProtocol" value="<%=inputDataBean.getScanningProtocol()%>">
     54<input type="hidden" name="parameter:treatmentProtocolParams" value="<%=inputDataBean.getTreatmentProtocolParams()%>">
     55<input type="hidden" name="parameter:extractionProtocolParams" value="<%=inputDataBean.getExtractionProtocolParams()%>">
     56<input type="hidden" name="parameter:labelingProtocolParams" value="<%=inputDataBean.getLabelingProtocolParams()%>">
     57<input type="hidden" name="parameter:hybridizationProtocolParams" value="<%=inputDataBean.getHybridizationProtocolParams()%>">
     58<input type="hidden" name="parameter:scanningProtocolParams" value="<%=inputDataBean.getScanningProtocolParams()%>">
    3259
     60<!-- 
     61<input type="hidden" name="parameter:platform" value="<%=inputDataBean.getPlatform()%>">
     62<input type="hidden" name="parameter:organism" value="<%=inputDataBean.getOrganism()%>">
     63<input type="hidden" name="parameter:numDesigns" value="<%=inputDataBean.getNumDesigns()%>">
     64<input type="hidden" name="parameter:dyeSwap" value="<%=inputDataBean.getDyeSwap()%>">
     65<input type="hidden" name="parameter:refSample" value="<%=inputDataBean.getRefSample()%>">
     66<input type="hidden" name="parameter:numTreatments" value="<%=inputDataBean.getNumTreatments()%>">
     67<input type="hidden" name="parameter:expFactors" value="<%=inputDataBean.getExpFactors()%>">
     68<input type="hidden" name="parameter:numReplicates" value="<%=inputDataBean.getNumReplicates()%>">
     69<input type="hidden" name="parameter:tissues" value="<%=inputDataBean.getTissues()%>">
     70<input type="hidden" name="parameter:pooling" value="<%=inputDataBean.getPooling()%>">
     71<input type="hidden" name="parameter:zipFile" value="<%=inputDataBean.getZipFile()%>">
     72-->
     73
     74<!--  table with the input form -->
    3375<table cellpadding="15">
    3476
     
    5799  <tr>
    58100    <td class="boldText">Was dye-swap used?</td>
    59     <td class="input">yes <input type="radio" name="parameter:dyeswap" value="yes"> no <input type="radio"
    60       name="parameter:dyeswap" value="no" checked="checked"> <br>
     101    <td class="input">yes <input type="radio" name="parameter:dyeSwap" value="yes"> no <input type="radio"
     102      name="parameter:dyeSwap" value="no" checked="checked"> <br>
    61103    </td>
    62104  </tr>
     
    85127    Dose(control,low,medium,high)</i>
    86128    </td>
    87     <td class="input"><textarea rows="7" cols="40" name="parameter:expFactors">Factor 1(value1,value2,...valueN)<br>Factor 2(value1,value2,...valueN)</textarea></td>
     129    <td class="input"><textarea rows="7" cols="40" name="parameter:expFactors">Factor 1(value1,value2,...valueN)</textarea></td>
    88130  </tr>
    89131
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