Changeset 512 for branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/hybridizations.jsp

Timestamp:

Dec 4, 2007, 3:46:31 PM (16 years ago)

Author:

mbayer

Message:

• have tied the interface to the importer plugin class now -- all parameters get picked up fine by the plugin

File:

• branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/hybridizations.jsp (modified) (3 diffs)

branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/hybridizations.jsp

@@ -27 +27 @@
 <form action="<%= request.getContextPath()%>/common/plugin/index.jsp" method="post">
 <input type="hidden" name="ID" value="<%=ID%>"> <input type="hidden" name="cmd" value="SetParameters"> 
-  <input type="hidden"name="requestID" value="<%=requestID%>"> 
-  <input type="hidden" name="parameter:experimentName" value="<%=inputDataBean.getExperimentName()%>"> 
-  <input type="hidden" name="parameter:treatmentProtocol" value="<%=inputDataBean.getTreatmentProtocol()%>">
+<input type="hidden"name="requestID" value="<%=requestID%>"> 
+<!-- these are the parameters from the input pages; need to pick them up individually from the bean here; ugly as hell but can't be done any other way -->
+<input type="hidden" name="parameter:domain" value="<%=inputDataBean.getDomain()%>"> 
+<input type="hidden" name="parameter:accession" value="<%=inputDataBean.getAccession()%>"> 
+<input type="hidden" name="parameter:qualityControl" value="<%=inputDataBean.getQualityControl()%>"> 
+<input type="hidden" name="parameter:experimentalDesign" value="<%=inputDataBean.getExperimentalDesign()%>"> 
+<input type="hidden" name="parameter:experimentName" value="<%=inputDataBean.getExperimentName()%>"> 
+<input type="hidden" name="parameter:description" value="<%=inputDataBean.getDescription()%>"> 
+<input type="hidden" name="parameter:releaseDate" value="<%=inputDataBean.getReleaseDate()%>"> 
+<input type="hidden" name="parameter:submissionDate" value="<%=inputDataBean.getSubmissionDate()%>"> 
+<input type="hidden" name="parameter:submitter" value="<%=inputDataBean.getSubmitter()%>"> 
+<input type="hidden" name="parameter:organization" value="<%=inputDataBean.getOrganization()%>"> 
+<input type="hidden" name="parameter:publicationTitle" value="<%=inputDataBean.getPublicationTitle()%>"> 
+<input type="hidden" name="parameter:authors" value="<%=inputDataBean.getAuthors()%>"> 
+<input type="hidden" name="parameter:journal" value="<%=inputDataBean.getJournal()%>"> 
+<input type="hidden" name="parameter:volume" value="<%=inputDataBean.getVolume()%>"> 
+<input type="hidden" name="parameter:issue" value="<%=inputDataBean.getIssue()%>"> 
+<input type="hidden" name="parameter:pages" value="<%=inputDataBean.getPages()%>"> 
+<input type="hidden" name="parameter:year" value="<%=inputDataBean.getYear()%>"> 
+<input type="hidden" name="parameter:pubmedId" value="<%=inputDataBean.getPubmedId()%>"> 
+<input type="hidden" name="parameter:treatmentProtocol" value="<%=inputDataBean.getTreatmentProtocol()%>"> 
+<input type="hidden" name="parameter:extractionProtocol" value="<%=inputDataBean.getExtractionProtocol()%>"> 
+<input type="hidden" name="parameter:labelingProtocol" value="<%=inputDataBean.getLabelingProtocol()%>"> 
+<input type="hidden" name="parameter:hybridizationProtocol" value="<%=inputDataBean.getHybridizationProtocol()%>"> 
+<input type="hidden" name="parameter:scanningProtocol" value="<%=inputDataBean.getScanningProtocol()%>"> 
+<input type="hidden" name="parameter:treatmentProtocolParams" value="<%=inputDataBean.getTreatmentProtocolParams()%>"> 
+<input type="hidden" name="parameter:extractionProtocolParams" value="<%=inputDataBean.getExtractionProtocolParams()%>"> 
+<input type="hidden" name="parameter:labelingProtocolParams" value="<%=inputDataBean.getLabelingProtocolParams()%>"> 
+<input type="hidden" name="parameter:hybridizationProtocolParams" value="<%=inputDataBean.getHybridizationProtocolParams()%>"> 
+<input type="hidden" name="parameter:scanningProtocolParams" value="<%=inputDataBean.getScanningProtocolParams()%>"> 
 
+<!--  
+<input type="hidden" name="parameter:platform" value="<%=inputDataBean.getPlatform()%>"> 
+<input type="hidden" name="parameter:organism" value="<%=inputDataBean.getOrganism()%>"> 
+<input type="hidden" name="parameter:numDesigns" value="<%=inputDataBean.getNumDesigns()%>"> 
+<input type="hidden" name="parameter:dyeSwap" value="<%=inputDataBean.getDyeSwap()%>"> 
+<input type="hidden" name="parameter:refSample" value="<%=inputDataBean.getRefSample()%>"> 
+<input type="hidden" name="parameter:numTreatments" value="<%=inputDataBean.getNumTreatments()%>"> 
+<input type="hidden" name="parameter:expFactors" value="<%=inputDataBean.getExpFactors()%>"> 
+<input type="hidden" name="parameter:numReplicates" value="<%=inputDataBean.getNumReplicates()%>"> 
+<input type="hidden" name="parameter:tissues" value="<%=inputDataBean.getTissues()%>"> 
+<input type="hidden" name="parameter:pooling" value="<%=inputDataBean.getPooling()%>"> 
+<input type="hidden" name="parameter:zipFile" value="<%=inputDataBean.getZipFile()%>"> 
+-->
+
+<!--  table with the input form -->
 <table cellpadding="15">
 
@@ -57 +99 @@
   <tr>
     <td class="boldText">Was dye-swap used?</td>
-    <td class="input">yes <input type="radio" name="parameter:dyeswap" value="yes"> no <input type="radio"
-      name="parameter:dyeswap" value="no" checked="checked"> <br>
+    <td class="input">yes <input type="radio" name="parameter:dyeSwap" value="yes"> no <input type="radio"
+      name="parameter:dyeSwap" value="no" checked="checked"> <br>
     </td>
   </tr>
@@ -85 +127 @@
     Dose(control,low,medium,high)</i>
     </td>
-    <td class="input"><textarea rows="7" cols="40" name="parameter:expFactors">Factor 1(value1,value2,...valueN)<br>Factor 2(value1,value2,...valueN)</textarea></td>
+    <td class="input"><textarea rows="7" cols="40" name="parameter:expFactors">Factor 1(value1,value2,...valueN)</textarea></td>
   </tr>