Ignore:
Timestamp:
Dec 14, 2007, 6:07:34 PM (14 years ago)
Author:
mbayer
Message:

made a number of tweaks to the interface

File:
1 edited

Legend:

Unmodified
Added
Removed
  • branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/experiment.jsp

    r521 r522  
    44<%@ page import="java.util.*"%>
    55
    6 <jsp:useBean id="inputDataBean" class="uk.ac.ebi.nugo.plugins.DataBean" scope="session"/>
     6<jsp:useBean id="inputDataBean" class="uk.ac.ebi.nugo.plugins.DataBean" scope="application"/>
    77<!-- submits the form data back to the bean assuming that each form element is matched to a variable in the bean by the same name -->
    88<jsp:setProperty name="inputDataBean" property="*"/>
     
    1414
    1515<link rel="stylesheet" type="text/css" href="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/styles.css" />
    16 
     16<link rel="stylesheet" type="text/css" href="/base/include/styles/main.css">
     17<link rel="stylesheet" type="text/css" href="/base/include/styles/size_m.css">
     18
     19<script language="JavaScript" src="<%= request.getContextPath()%>/include/scripts/main.js" type="text/javascript"></script>
    1720
    1821<script type="text/javascript">
     22    function getScale()
     23    {
     24      return 1.0;
     25    }
     26    function selectArrayDesignOnClick()
     27    {
     28      var frm = document.forms['experimentData'];
     29      var url = '<%= request.getContextPath()%>/lims/arraydesigns/index.jsp?ID=b8c5fcee801ca39c&cmd=UpdateContext&mode=selectone&callback=setArrayDesignCallback';
     30      if (frm.accession.length > 0)
     31      {
     32        var id = Math.abs(parseInt(frm.accession[0].value));       
     33        url += '&item_id='+id;
     34      }
     35      Main.openPopup(url, 'SelectArrayDesign', 1000, 700);
     36    }
     37    function setArrayDesignCallback(id, name)
     38    {
     39      var frm = document.forms['experimentData'];
     40      var list = frm.accession;
     41      if (list.length < 1 || list[0].value == '0') // >
     42      {
     43        Forms.addListOption(list, 0, new Option());
     44      }
     45      list[0].value = name;
     46      list[0].text = name;
     47      list.selectedIndex = 0;
     48      parentsChanged = true;
     49    }
     50  //submits form
     51  function submit()
     52  {
     53    document.experimentData.submit();
     54  }
    1955
    2056    //function to display or hide a given element
     
    5995</head>
    6096
     97<!-- /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// -->
     98
    6199<body>
     100
    62101
    63102<%
     
    84123
    85124Please configure your experiment for upload by answering the questions on this and the following two pages.
    86 <br>
    87125The answers you provide will be used to automatically create a new experiment in BASE and your raw data will be imported
    88 into this.
     126into this. All the associated objects (Hybridizations, Scans, Extracts etc.) will also be created.
    89127<p>
    90128
    91 <form action="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/protocols.jsp" method="post">
     129<form name="experimentData" action="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/protocols.jsp" method="post">
    92130<input type="hidden" name="ID" value="<%=ID%>">
    93131
     
    99137    <td class="input"><input type="text" size="45" name="domain" value="scri.ac.uk" /></td>
    100138    <td >The domain tag provides information on the originator of the output MAGE-ML document. This field can contain
    101     any suitable string, such as the originating internet domain name (e.g., "ebi.ac.uk").</td>
     139    any suitable string, such as the originating internet domain name (e.g. "ebi.ac.uk").</td>
    102140  </tr>
    103141 
    104142  <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    105143  <tr>
    106     <td class="boldText">Accession:</td>
    107     <td class="input"><input type="text" size="45" name="accession" value="E-SCRI-001" /></td>
    108     <td >The experiment accession number is a unique identifier assigned to each experiment. Accession numbers for
    109     experiments submitted to ArrayExpress have the format E-XXXX-n.</td>
    110   </tr>
    111  
    112   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    113   <tr>
    114     <td class="boldText">Quality Control:</td>
    115     <td class="input"><select multiple name="qualityControl">
    116       <option selected="selected">biological replicate</option>
    117       <option>dye swap quality control</option>
    118       <option>peer review quality control</option>
    119       <option>real time PCR quality control</option>
    120       <option>reverse transcription PCR quality control</option>
    121       <option selected="selected">spike quality control</option>
    122       <option>technical replicate</option>
    123     </select></td>
    124     <td>A list of terms taken from the <a href="http://mged.sourceforge.net/ontologies/MGEDontology.php" target="new">MGED
    125     ontology</a>. Multiple values can be selected by holding down the Ctrl key and clicking on items.</td>
    126   </tr>
    127 
    128   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    129   <tr>
    130     <td class="boldText">Experiment Design Type:</td>
     144    <td class="boldText">Array Acession:</td>
     145
    131146    <td class="input">
    132147
    133     <table class="noBorder" cellpadding="3" >
    134 
     148    <div id="accession" class="selectionlist required">
     149    <table class="noBorder"  cellspacing="0" cellpadding="5">
    135150      <tr class="noBorder">
    136         <td valign="top">Biological Property<br/>
    137         </td>
    138         <td colspan="2"><a onclick="showHideItems('BiologicalProperty', 'buttonBiologicalProperty');"
    139           title="Show/hide items"> <img src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" border="0" id="buttonBiologicalProperty"
    140           name="buttonBiologicalProperty" /></a> <!-- begin div containing hidden items -->
    141         <div id="BiologicalProperty" style="display:none"><select multiple="multiple" name="biologicalProperty">
    142           <option selected="selected">cell_component_comparison_design</option>
    143           <option>cell_cycle_design</option>
    144           <option>cell_type_comparison_design</option>
    145           <option>cellular_process_design</option>
    146           <option>development_or_differentiation_design</option>
    147           <option>imprinting_design</option>
    148           <option>individual_genetic_characteristics_design</option>
    149           <option>innate_behavior_design</option>
    150           <option>is_expressed_design</option>
    151           <option>organism_part_comparison_design</option>
    152           <option>organism_status_design</option>
    153           <option>physiological_process_design</option>
    154           <option>sex_design</option>
    155           <option>species_design</option>
    156           <option>strain_or_line_design</option>
    157           <option>unknown_experiment_design_type</option>
    158         </select></div>
     151        <td><select name="accession" onchange="arrayDesignOnChange()"></select></td>
     152        <td>
     153        <div class="buttonclass"
     154          onmouseover="this.className='buttonclass_hover';"
     155          onmouseout="this.className='buttonclass';"
     156          onclick="selectArrayDesignOnClick()">
     157        <div class="buttonclass_inner">Select&hellip;</div>
     158        </div>
    159159        </td>
    160160      </tr>
    161 
    162       <tr class="noBorder">
    163         <td>BioMolecular Annotation</td>
    164         <td><a onclick="showHideItems('BioMolecularAnnotation', 'buttonBioMolecularAnnotation');"
    165           title="Show/hide items"> <img src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" border="0" id="buttonBioMolecularAnnotation"
    166           name="buttonBioMolecularAnnotation" /></a> <!-- begin div containing hidden items -->
    167         <div id="BioMolecularAnnotation" style="display:none"><select multiple="multiple" name="bioMolecularAnnotation">
    168           <option selected="selected">RNA_stability_design</option>
    169           <option>binding_site_identification_design</option>
    170           <option>co-expression_design</option>
    171           <option>comparative_genome_hybridization_design</option>
    172           <option>genotyping_design</option>
    173           <option>operon_identification_design</option>
    174           <option>secreted_protein_identification_design</option>
    175           <option>tiling_path_design</option>
    176           <option>transcript_identification_design</option>
    177           <option>translational_bias_design</option>
    178           <option>unknown_experiment_design_type</option>
    179         </select></div>
    180         </td>
    181       </tr>
    182 
    183       <tr class="noBorder">
    184         <td>Epidemiological Design</td>
    185         <td><a onclick="showHideItems('EpidemiologicalDesign', 'buttonEpidemiologicalDesign');" title="Show/hide items">
    186         <img src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" border="0" id="buttonEpidemiologicalDesign" name="buttonEpidemiologicalDesign" /></a> <!-- begin div containing hidden items -->
    187         <div id="EpidemiologicalDesign" style="display:none"><select multiple="multiple" name="epidemiologicalDesign">
    188           <option>clinical_history_design</option>
    189           <option>disease_state_design</option>
    190           <option selected="selected">family_history_design</option>
    191           <option>unknown_experiment_design_type</option>
    192         </select></div>
    193         </td>
    194       </tr>
    195 
    196       <tr class="noBorder">
    197         <td>Methodological Design</td>
    198         <td><a onclick="showHideItems('MethodologicalDesign', 'buttonMethodologicalDesign');" title="Show/hide items">
    199         <img src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" border="0" id="buttonMethodologicalDesign" name="buttonMethodologicalDesign" /></a> <!-- begin div containing hidden items -->
    200         <div id="MethodologicalDesign" style="display:none"><select multiple="multiple" name="methodologicalDesign">
    201           <option>all_pairs</option>
    202           <option>array_platform_variation_design</option>
    203           <option>dye_swap_design</option>
    204           <option>ex_vivo_design</option>
    205           <option>hardware_variation_design</option>
    206           <option>in_vitro_design</option>
    207           <option>in_vivo_design</option>
    208           <option>loop_design</option>
    209           <option>normalization_testing_design</option>
    210           <option>operator_variation_design</option>
    211           <option>optimization_design</option>
    212           <option>quality_control_testing_design</option>
    213           <option>reference_design</option>
    214           <option>replicate_design</option>
    215           <option>self_vs_self_design</option>
    216           <option>software_variation_design</option>
    217           <option>time_series_design</option>
    218           <option>unknown_experiment_design_type</option>
    219         </select></div>
    220         </td>
    221       </tr>
    222 
    223       <tr class="noBorder">
    224         <td>Perturbational Design</td>
    225         <td><a onclick="showHideItems('PerturbationalDesign', 'buttonPerturbationalDesign');" title="Show/hide items">
    226         <img src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" border="0" id="buttonPerturbationalDesign" name="buttonPerturbationalDesign" /></a> <!-- begin div containing hidden items -->
    227         <div id="PerturbationalDesign" style="display:none"><select multiple="multiple" name="perturbationalDesign">
    228           <option>cellular_modification_design</option>
    229           <option>compound_treatment_design</option>
    230           <option>disease_state_design</option>
    231           <option>dose_response_design</option>
    232           <option>genetic_modification_design</option>
    233           <option>growth_condition_design</option>
    234           <option>injury_design</option>
    235           <option>non-targeted_transgenic_variation_design</option>
    236           <option>pathogenicity_design</option>
    237           <option>stimulated_design_type</option>
    238           <option>stimulus_or_stress_design</option>
    239           <option>unknown_experiment_design_type</option>
    240         </select></div>
    241         </td>
    242       </tr>
    243 
    244       <tr class="noBorder">
    245         <td>Technological Design</td>
    246         <td><a onclick="showHideItems('TechnologicalDesign', 'buttonTechnologicalDesign');" title="Show/hide items">
    247         <img src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" border="0" id="buttonTechnologicalDesign" name="TechnologicalDesign" /></a> <!-- begin div containing hidden items -->
    248         <div id="TechnologicalDesign" style="display:none"><select multiple="multiple" name="technologicalDesign">
    249           <option>binding_site_identification_design</option>
    250           <option>cellular_modification_design</option>
    251           <option>comparative_genome_hybridization_design</option>
    252           <option>transcript_identification_design</option>
    253         </select></div>
    254         </td>
    255       </tr>
    256 
    257161    </table>
    258 
    259 
     162    </div>
    260163    </td>
    261     <td>A list of terms taken from the <a href="http://mged.sourceforge.net/ontologies/MGEDontology.php" target="new">MGED ontology</a>.
    262     <p>Click "expand" for an item to see list boxes with specific choices.<br>
    263     Multiple values can be selected by holding down the Ctrl key and clicking on items.
    264     </td>
     164
     165    <td>Please select an existing array design from BASE or create a
     166    new one. For ArrayExpress submissions, the array design name becomes
     167    the array accession identifier. Accession numbers for experiments
     168    submitted to ArrayExpress should have the format E-XXXX-n.</td>
     169
    265170  </tr>
    266  
    267   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     171
     172
    268173  <tr>
    269     <td class="boldText">Experiment Name:</td>
    270     <td class="input"> 
    271     <textarea rows="2" cols="30" name="experimentName"><%=expName %></textarea>
    272     </td>
    273     <td>The name you have chosen for the Experiment.</td>
    274   </tr>
    275  
    276   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    277   <tr>
    278     <td class="boldText">Experiment Description:</td>
    279     <td class="input">
    280     <textarea rows="2" cols="30" name="description">description goes here</textarea>
    281     </td>
    282     <td>A short paragraph describing the purpose of the experiment.</td>
    283   </tr>
    284  
    285   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    286   <tr>
    287     <td class="boldText">Release Date:</td>
    288     <td class="input"><input type="text" size="10" name="releaseDate" value="2007-12-03" /></td>
    289     <td>Date for public release, in the format YYYY-MM-DD.</td>
    290   </tr>
    291   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    292   <tr>
    293     <td class="boldText">Submission Date:</td>
    294     <td class="input"><input type="text" size="10" name="submissionDate" value="2007-12-03" /></td>
    295     <td>Date of submission, in the format YYYY-MM-DD.</td>
    296   </tr>
    297   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    298   <tr>
    299     <td class="boldText">Submitter:</td>
    300     <td class="input"><input type="text" size="45" name="submitter" value="Joe Bloggs" /></td>
    301     <td>The name of the person responsible for submitting the experiment to the database.</td>
    302   </tr>
    303   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    304   <tr>
    305     <td class="boldText">Organization:</td>
    306     <td class="input"><input type="text" size="45" name="organization" value="SCRI" /></td>
    307     <td>The organization to which the submitter is affiliated.</td>
    308   </tr>
    309   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    310 
     174
     175      <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     176    <tr>
     177      <td class="boldText">Quality Control:</td>
     178      <td class="input"><select multiple name="qualityControl">
     179        <option selected="selected">biological replicate</option>
     180        <option>dye swap quality control</option>
     181        <option>peer review quality control</option>
     182        <option>real time PCR quality control</option>
     183        <option>reverse transcription PCR quality control</option>
     184        <option selected="selected">spike quality control</option>
     185        <option>technical replicate</option>
     186      </select></td>
     187      <td>A list of terms taken from the <a
     188        href="http://mged.sourceforge.net/ontologies/MGEDontology.php"
     189        target="_blank">MGED ontology</a>. Multiple values can be selected
     190      by holding down the Ctrl key and clicking on items.</td>
     191    </tr>
     192
     193    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     194    <tr>
     195      <td class="boldText">Experiment Design Type:</td>
     196      <td class="input">
     197
     198      <table class="noBorder" cellpadding="3">
     199
     200        <tr class="noBorder">
     201          <td valign="top">Biological Property<br />
     202          </td>
     203          <td colspan="2"><a
     204            onclick="showHideItems('BiologicalProperty', 'buttonBiologicalProperty');"
     205            title="Show/hide items"> <img
     206            src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif"
     207            border="0" id="buttonBiologicalProperty"
     208            name="buttonBiologicalProperty" /></a> <!-- begin div containing hidden items -->
     209          <div id="BiologicalProperty" style="display:none"><select
     210            multiple="multiple" name="biologicalProperty">
     211            <option selected="selected">cell_component_comparison_design</option>
     212            <option>cell_cycle_design</option>
     213            <option>cell_type_comparison_design</option>
     214            <option>cellular_process_design</option>
     215            <option>development_or_differentiation_design</option>
     216            <option>imprinting_design</option>
     217            <option>individual_genetic_characteristics_design</option>
     218            <option>innate_behavior_design</option>
     219            <option>is_expressed_design</option>
     220            <option>organism_part_comparison_design</option>
     221            <option>organism_status_design</option>
     222            <option>physiological_process_design</option>
     223            <option>sex_design</option>
     224            <option>species_design</option>
     225            <option>strain_or_line_design</option>
     226            <option>unknown_experiment_design_type</option>
     227          </select></div>
     228          </td>
     229        </tr>
     230
     231        <tr class="noBorder">
     232          <td>BioMolecular Annotation</td>
     233          <td><a
     234            onclick="showHideItems('BioMolecularAnnotation', 'buttonBioMolecularAnnotation');"
     235            title="Show/hide items"> <img
     236            src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif"
     237            border="0" id="buttonBioMolecularAnnotation"
     238            name="buttonBioMolecularAnnotation" /></a> <!-- begin div containing hidden items -->
     239          <div id="BioMolecularAnnotation" style="display:none"><select
     240            multiple="multiple" name="bioMolecularAnnotation">
     241            <option selected="selected">RNA_stability_design</option>
     242            <option>binding_site_identification_design</option>
     243            <option>co-expression_design</option>
     244            <option>comparative_genome_hybridization_design</option>
     245            <option>genotyping_design</option>
     246            <option>operon_identification_design</option>
     247            <option>secreted_protein_identification_design</option>
     248            <option>tiling_path_design</option>
     249            <option>transcript_identification_design</option>
     250            <option>translational_bias_design</option>
     251            <option>unknown_experiment_design_type</option>
     252          </select></div>
     253          </td>
     254        </tr>
     255
     256        <tr class="noBorder">
     257          <td>Epidemiological Design</td>
     258          <td><a
     259            onclick="showHideItems('EpidemiologicalDesign', 'buttonEpidemiologicalDesign');"
     260            title="Show/hide items"> <img
     261            src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif"
     262            border="0" id="buttonEpidemiologicalDesign"
     263            name="buttonEpidemiologicalDesign" /></a> <!-- begin div containing hidden items -->
     264          <div id="EpidemiologicalDesign" style="display:none"><select
     265            multiple="multiple" name="epidemiologicalDesign">
     266            <option>clinical_history_design</option>
     267            <option>disease_state_design</option>
     268            <option selected="selected">family_history_design</option>
     269            <option>unknown_experiment_design_type</option>
     270          </select></div>
     271          </td>
     272        </tr>
     273
     274        <tr class="noBorder">
     275          <td>Methodological Design</td>
     276          <td><a
     277            onclick="showHideItems('MethodologicalDesign', 'buttonMethodologicalDesign');"
     278            title="Show/hide items"> <img
     279            src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif"
     280            border="0" id="buttonMethodologicalDesign"
     281            name="buttonMethodologicalDesign" /></a> <!-- begin div containing hidden items -->
     282          <div id="MethodologicalDesign" style="display:none"><select
     283            multiple="multiple" name="methodologicalDesign">
     284            <option>all_pairs</option>
     285            <option>array_platform_variation_design</option>
     286            <option>dye_swap_design</option>
     287            <option>ex_vivo_design</option>
     288            <option>hardware_variation_design</option>
     289            <option>in_vitro_design</option>
     290            <option>in_vivo_design</option>
     291            <option>loop_design</option>
     292            <option>normalization_testing_design</option>
     293            <option>operator_variation_design</option>
     294            <option>optimization_design</option>
     295            <option>quality_control_testing_design</option>
     296            <option>reference_design</option>
     297            <option>replicate_design</option>
     298            <option>self_vs_self_design</option>
     299            <option>software_variation_design</option>
     300            <option>time_series_design</option>
     301            <option>unknown_experiment_design_type</option>
     302          </select></div>
     303          </td>
     304        </tr>
     305
     306        <tr class="noBorder">
     307          <td>Perturbational Design</td>
     308          <td><a
     309            onclick="showHideItems('PerturbationalDesign', 'buttonPerturbationalDesign');"
     310            title="Show/hide items"> <img
     311            src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif"
     312            border="0" id="buttonPerturbationalDesign"
     313            name="buttonPerturbationalDesign" /></a> <!-- begin div containing hidden items -->
     314          <div id="PerturbationalDesign" style="display:none"><select
     315            multiple="multiple" name="perturbationalDesign">
     316            <option>cellular_modification_design</option>
     317            <option>compound_treatment_design</option>
     318            <option>disease_state_design</option>
     319            <option>dose_response_design</option>
     320            <option>genetic_modification_design</option>
     321            <option>growth_condition_design</option>
     322            <option>injury_design</option>
     323            <option>non-targeted_transgenic_variation_design</option>
     324            <option>pathogenicity_design</option>
     325            <option>stimulated_design_type</option>
     326            <option>stimulus_or_stress_design</option>
     327            <option>unknown_experiment_design_type</option>
     328          </select></div>
     329          </td>
     330        </tr>
     331
     332        <tr class="noBorder">
     333          <td>Technological Design</td>
     334          <td><a
     335            onclick="showHideItems('TechnologicalDesign', 'buttonTechnologicalDesign');"
     336            title="Show/hide items"> <img
     337            src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif"
     338            border="0" id="buttonTechnologicalDesign"
     339            name="TechnologicalDesign" /></a> <!-- begin div containing hidden items -->
     340          <div id="TechnologicalDesign" style="display:none"><select
     341            multiple="multiple" name="technologicalDesign">
     342            <option>binding_site_identification_design</option>
     343            <option>cellular_modification_design</option>
     344            <option>comparative_genome_hybridization_design</option>
     345            <option>transcript_identification_design</option>
     346          </select></div>
     347          </td>
     348        </tr>
     349
     350      </table>
     351
     352
     353      </td>
     354      <td>A list of terms taken from the <a
     355        href="http://mged.sourceforge.net/ontologies/MGEDontology.php"
     356        target="_blank">MGED ontology</a>.
     357      <p>Click "expand" for an item to see list boxes with specific
     358      choices.<br />
     359      <br />
     360      Multiple values can be selected by holding down the Ctrl key and
     361      clicking on items.
     362      </td>
     363    </tr>
     364
     365    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     366    <tr>
     367      <td class="boldText">Experiment Name:</td>
     368      <td class="input"><textarea rows="2" cols="30"
     369        name="experimentName"><%=expName %></textarea></td>
     370      <td>The name you have chosen for the Experiment.</td>
     371    </tr>
     372
     373    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     374    <tr>
     375      <td class="boldText">Experiment Description:</td>
     376      <td class="input"><textarea rows="2" cols="30"
     377        name="description">description goes here</textarea></td>
     378      <td>A short paragraph describing the purpose of the experiment.</td>
     379    </tr>
     380
     381    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     382    <tr>
     383      <td class="boldText">Release Date:</td>
     384      <td class="input"><input type="text" size="10"
     385        name="releaseDate" value="2007-12-03" /></td>
     386      <td>Date for public release, in the format YYYY-MM-DD.</td>
     387    </tr>
     388    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     389    <tr>
     390      <td class="boldText">Submission Date:</td>
     391      <td class="input"><input type="text" size="10"
     392        name="submissionDate" value="2007-12-03" /></td>
     393      <td>Date of submission, in the format YYYY-MM-DD.</td>
     394    </tr>
     395    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     396    <tr>
     397      <td class="boldText">Submitter:</td>
     398      <td class="input"><input type="text" size="45" name="submitter"
     399        value="Joe Bloggs" /></td>
     400      <td>The name of the person responsible for submitting the
     401      experiment to the database.</td>
     402    </tr>
     403    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     404    <tr>
     405      <td class="boldText">Organization:</td>
     406      <td class="input"><input type="text" size="45"
     407        name="organization" value="SCRI" /></td>
     408      <td>The organization to which the submitter is affiliated.</td>
     409    </tr>
     410    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     411
     412    <tr class="noBorder">
     413      <td class="boldText">Publication Details:</td>
     414      <td class="input"></td>
     415      <td></td>
     416    </tr>
     417
     418    <tr class="noBorder">
     419      <td>Title:</td>
     420      <td class="input"><textarea rows="2" cols="30"
     421        name="publicationTitle">My Ropey Paper</textarea></td>
     422
     423      <td rowspan="4">Publication details for any manuscript
     424      associated with the experiment. <p>
     425      The authors list is a semicolon-delimited list of names.<p>
     426      The journal field should contain a standard Pubmed journal
     427      abbreviated name. </td>
     428    </tr>
     429    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     430    <tr class="noBorder">
     431      <td>Authors:</td>
     432      <td class="input"><textarea rows="2" cols="30" name="authors">Bloggs, Joe</textarea></td>
     433      <td></td>
     434    </tr>
     435    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     436    <tr class="noBorder">
     437      <td>Journal:</td>
     438      <td class="input"><textarea rows="2" cols="30" name="journal">The Journal of Irreproducible Results</textarea></td>
     439      <td></td>
     440    </tr>
     441    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     442    <tr class="noBorder">
     443      <td>Volume:</td>
     444      <td class="input"><input type="text" size="10" name="volume"
     445        value="5" /></td>
     446      <td></td>
     447    </tr>
     448    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     449    <tr class="noBorder">
     450      <td>Issue:</td>
     451      <td class="input"><input type="text" size="10" name="issue"
     452        value="2" /></td>
     453      <td></td>
     454    </tr>
     455    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     456    <tr class="noBorder">
     457      <td>Pages:</td>
     458      <td class="input"><input type="text" size="10" name="pages"
     459        value="1234-1235" /></td>
     460      <td></td>
     461    </tr>
     462    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     463    <tr class="noBorder">
     464      <td>Year:</td>
     465      <td class="input"><input type="text" size="10" name="year"
     466        value="2007" /></td>
     467      <td></td>
     468    </tr>
     469    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     470    <tr class="noBorder">
     471      <td>Pubmed ID:</td>
     472      <td class="input"><input type="text" size="30" name="pubmedId"
     473        value="11009762" /></td>
     474      <td></td>
     475
     476    </tr>
     477
     478    <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
     479  </table>
     480
     481  <p>
     482
     483
     484  <table align="center" class="noBorder"  cellpadding="5">
    311485  <tr class="noBorder">
    312     <td class="boldText">Publication Details:</td>
    313     <td  class="input"></td>
    314     <td></td>
    315   </tr>
    316 
    317   <tr class="noBorder">
    318     <td>Title:</td>
    319     <td class="input"><textarea rows="2" cols="30" name="publicationTitle">My Ropey Paper</textarea></td>
    320 
    321     <td rowspan="4">Publication details for any manuscript associated with the experiment. The journal field should
    322     contain a standard Pubmed journal abbreviated name. The authors list is a semicolon-delimited list of names.</td>
    323   </tr>
    324   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    325       <tr class="noBorder">
    326         <td>Authors:</td>
    327         <td class="input"><textarea rows="2" cols="30" name="authors">Bloggs, Joe</textarea></td>
    328         <td></td>
    329       </tr>
    330       <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    331       <tr class="noBorder">
    332         <td>Journal:</td>
    333         <td class="input"><textarea rows="2" cols="30" name="journal">The Journal of Irreproducible Results</textarea></td>
    334         <td></td>
    335       </tr>
    336       <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    337       <tr class="noBorder">
    338         <td>Volume:</td>
    339         <td class="input"><input type="text" size="10" name="volume" value="5" /></td>
    340         <td></td>
    341       </tr>
    342       <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    343       <tr class="noBorder">
    344         <td>Issue:</td>
    345         <td class="input"><input type="text" size="10" name="issue" value="2" /></td>
    346         <td></td>
    347       </tr>
    348       <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    349       <tr class="noBorder">
    350         <td>Pages:</td>
    351         <td class="input"><input type="text" size="10" name="pages" value="1234-1235" /></td>
    352         <td></td>
    353       </tr>
    354       <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    355       <tr class="noBorder">
    356         <td>Year:</td>
    357         <td class="input"><input type="text" size="10" name="year" value="2007" /></td>
    358         <td></td>
    359       </tr>
    360       <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    361       <tr class="noBorder">
    362         <td>Pubmed ID:</td>
    363         <td class="input"><input type="text" size="30" name="pubmedId" value="11009762" /></td>
    364         <td></td>
    365 
    366   </tr>
    367 
    368   <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ -->
    369 </table>
    370 
    371 <p>
    372 
    373 <table class="noBorder" width="100%">
    374 <tr class="noBorder" ><td class="centered">
    375 <input type="submit"  value="Continue"/>
    376 </td>
    377 </tr>
    378 </table>
    379 
    380   <table align="center">
    381   <tr>
    382     <td id="next" width="50%"><div class="buttonclass" onmouseover="this.className='buttonclass_hover';" onmouseout="this.className='buttonclass';" onclick="submit();"><div class="buttonclass_inner"><table border="0" cellspacing="0" cellpadding="0"><tr><td><img src="/base/images/gonext.gif" border="0"></td><td>Continue</td></tr></table></div></div></td>
    383     <td id="close" width="50%"><div class="buttonclass" onmouseover="this.className='buttonclass_hover';" onmouseout="this.className='buttonclass';" onclick="window.close();"><div class="buttonclass_inner"><table border="0" cellspacing="0" cellpadding="0"><tr><td><img src="/base/images/cancel.gif" border="0"></td><td>Cancel</td></tr></table></div></div></td>
     486    <td id="next" width="50%"><div class="buttonclass" onmouseover="this.className='buttonclass_hover';" onmouseout="this.className='buttonclass';" onclick="submit()"><div class="buttonclass_inner"><table  class="noBorder" cellspacing="0" cellpadding="0"><tr  class="noBorder"><td><img src="/base/images/gonext.gif" border="0"></td><td>Continue</td></tr></table></div></div></td>
     487    <td id="close" width="50%"><div class="buttonclass" onmouseover="this.className='buttonclass_hover';" onmouseout="this.className='buttonclass';" onclick="window.close()"><div class="buttonclass_inner"><table  class="noBorder" cellspacing="0" cellpadding="0"><tr  class="noBorder"><td><img src="/base/images/cancel.gif" border="0"></td><td>Cancel</td></tr></table></div></div></td>
    384488  </tr>
    385489  </table>
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