Changeset 524
- Timestamp:
- Dec 20, 2007, 6:14:57 PM (15 years ago)
- Location:
- branches/uk_ac_ebi_Tab2MageImporter
- Files:
-
- 1 deleted
- 7 edited
Legend:
- Unmodified
- Added
- Removed
-
branches/uk_ac_ebi_Tab2MageImporter/html/experiment.html
r511 r524 3 3 <head> 4 4 <title>Tab2MAGE Importer -- Experiment</title> 5 <link rel="stylesheet" type="text/css" href=" styles.css" />5 <link rel="stylesheet" type="text/css" href="../jsp/uk/ac/ebi/nugo/plugins/styles.css" /> 6 6 7 7 <script type="text/javascript"> … … 63 63 <input type="hidden" name="ID" value="<%=ID%>"> 64 64 65 <table cellpadding=" 10">65 <table cellpadding="0" cellspacing="0"> 66 66 67 67 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 68 <tr >68 <tr > 69 69 <td class="boldText">Domain:</td> 70 <td class="input"><input type="text" size="45" name="domain" value=" " /></td>71 <td >The domain tag provides information on the originator of the output MAGE-ML document. This field can contain72 any suitable string, such as the originating internet domain name (e.g. ,"ebi.ac.uk").</td>70 <td class="input"><input type="text" size="45" name="domain" value="scri.ac.uk" /></td> 71 <td class="helpText">The domain tag provides information on the originator of the output MAGE-ML document. This field can contain 72 any suitable string, such as the originating internet domain name (e.g. "ebi.ac.uk").</td> 73 73 </tr> 74 74 75 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 75 <tr> 76 <td class="boldText">Accession:</td> 77 <td class="input"><input type="text" size="45" name="accession" value="" /></td> 78 <td >The experiment accession number is a unique identifier assigned to each experiment. Accession numbers for 79 experiments submitted to ArrayExpress have the format E-XXXX-n.</td> 80 </tr> 81 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 82 <tr> 83 <td class="boldText">Quality Control:</td> 76 <tr > 77 <td class="boldText">Array Acession:</td> 78 84 79 <td class="input"> 85 80 86 <table class="noBorder" cellpadding="1"> 87 88 <tr class="noBorder"> 89 <td>biological replicate</td> 90 <td><input type="checkbox" name="biological replicate" value="biological replicate" /></td> 91 </tr> 92 93 <tr class="noBorder"> 94 <td>dye swap quality control</td> 95 <td><input type="checkbox" name="dye swap quality control" value="dye swap quality control" /></td> 96 </tr> 97 98 <tr class="noBorder"> 99 <td>peer review quality control</td> 100 <td><input type="checkbox" name="peer review quality control" value="peer review quality control" /></td> 101 </tr> 102 103 <tr class="noBorder"> 104 <td>real time PCR quality control</td> 105 <td><input type="checkbox" name="real time PCR quality control" value="real time PCR quality control" /></td> 106 </tr> 107 108 <tr class="noBorder"> 109 <td>reverse transcription PCR quality control</td> 110 <td><input type="checkbox" name="reverse transcription PCR quality control" 111 value="reverse transcription PCR quality control" /></td> 112 </tr> 113 114 <tr class="noBorder"> 115 <td>spike quality control</td> 116 <td><input type="checkbox" name="spike quality control" value="spike quality control" /></td> 117 </tr> 118 119 <tr class="noBorder"> 120 <td>technical replicate</td> 121 <td><input type="checkbox" name="technical replicate" value="technical replicate" /></td> 122 </tr> 123 124 </table> 125 126 </td> 127 <td>A list of terms taken from the MGED ontology. Multiple values can be selected.</td> 128 </tr> 129 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 130 <tr> 131 <td class="boldText">Experiment Design Type:</td> 132 <td class="input"> 133 134 <table class="noBorder" cellpadding="3> 135 136 <tr class="noBorder"> 137 <td valign="top">Biological Property<br/> 138 </td> 139 <td colspan="2"><a onclick="showHideItems('BiologicalProperty', 'buttonBiologicalProperty');" 140 title="Show/hide items"> <img src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" border="0" id="buttonBiologicalProperty" 141 name="buttonBiologicalProperty" /></a> <!-- begin div containing hidden items --> 142 <div id="BiologicalProperty" style="display:none"><select multiple="multiple"> 143 <option>cell_component_comparison_design</option> 144 <option>cell_cycle_design</option> 145 <option>cell_type_comparison_design</option> 146 <option>cellular_process_design</option> 147 <option>development_or_differentiation_design</option> 148 <option>imprinting_design</option> 149 <option>individual_genetic_characteristics_design</option> 150 <option>innate_behavior_design</option> 151 <option>is_expressed_design</option> 152 <option>organism_part_comparison_design</option> 153 <option>organism_status_design</option> 154 <option>physiological_process_design</option> 155 <option>sex_design</option> 156 <option>species_design</option> 157 <option>strain_or_line_design</option> 158 <option>unknown_experiment_design_type</option> 159 </select></div> 81 <div id="accession" class="selectionlist required"> 82 <table class="noBorder" cellspacing="0" cellpadding="5"> 83 <tr> 84 <td style="border-style: none;"><select name="accession" onchange="arrayDesignOnChange()"></select></td> 85 <td style="border-style: none;"> 86 <div class="buttonclass" 87 onmouseover="this.className='buttonclass_hover';" 88 onmouseout="this.className='buttonclass';" 89 onclick="selectArrayDesignOnClick()"> 90 <div class="buttonclass_inner">Select…</div> 91 </div> 160 92 </td> 161 93 </tr> 162 163 <tr class="noBorder">164 <td>BioMolecular Annotation</td>165 <td><a onclick="showHideItems('BioMolecularAnnotation', 'buttonBioMolecularAnnotation');"166 title="Show/hide items"> <img src="show.gif" border="0" id="buttonBioMolecularAnnotation"167 name="buttonBioMolecularAnnotation" /></a> <!-- begin div containing hidden items -->168 <div id="BioMolecularAnnotation" style="display:none"><select multiple="multiple">169 <option>RNA_stability_design</option>170 <option>binding_site_identification_design</option>171 <option>co-expression_design</option>172 <option>comparative_genome_hybridization_design</option>173 <option>genotyping_design</option>174 <option>operon_identification_design</option>175 <option>secreted_protein_identification_design</option>176 <option>tiling_path_design</option>177 <option>transcript_identification_design</option>178 <option>translational_bias_design</option>179 <option>unknown_experiment_design_type</option>180 </select></div>181 </td>182 </tr>183 184 <tr class="noBorder">185 <td>Epidemiological Design</td>186 <td><a onclick="showHideItems('EpidemiologicalDesign', 'buttonEpidemiologicalDesign');" title="Show/hide items">187 <img src="show.gif" border="0" id="buttonEpidemiologicalDesign" name="buttonEpidemiologicalDesign" /></a> <!-- begin div containing hidden items -->188 <div id="EpidemiologicalDesign" style="display:none"><select multiple="multiple">189 <option>clinical_history_design</option>190 <option>disease_state_design</option>191 <option>family_history_design</option>192 <option>unknown_experiment_design_type</option>193 </option>194 </select></div>195 </td>196 </tr>197 198 <tr class="noBorder">199 <td>Methodological Design</td>200 <td><a onclick="showHideItems('MethodologicalDesign', 'buttonMethodologicalDesign');" title="Show/hide items">201 <img src="show.gif" border="0" id="buttonMethodologicalDesign" name="buttonMethodologicalDesign" /></a> <!-- begin div containing hidden items -->202 <div id="MethodologicalDesign" style="display:none"><select multiple="multiple">203 <option>all_pairs</option>204 <option>array_platform_variation_design</option>205 <option>dye_swap_design</option>206 <option>ex_vivo_design</option>207 <option>hardware_variation_design</option>208 <option>in_vitro_design</option>209 <option>in_vivo_design</option>210 <option>loop_design</option>211 <option>normalization_testing_design</option>212 <option>operator_variation_design</option>213 <option>optimization_design</option>214 <option>quality_control_testing_design</option>215 <option>reference_design</option>216 <option>replicate_design</option>217 <option>self_vs_self_design</option>218 <option>software_variation_design</option>219 <option>time_series_design</option>220 <option>unknown_experiment_design_type</option>221 </option>222 </select></div>223 </td>224 </tr>225 226 <tr class="noBorder">227 <td>Perturbational Design</td>228 <td><a onclick="showHideItems('PerturbationalDesign', 'buttonPerturbationalDesign');" title="Show/hide items">229 <img src="show.gif" border="0" id="buttonPerturbationalDesign" name="buttonPerturbationalDesign" /></a> <!-- begin div containing hidden items -->230 <div id="PerturbationalDesign" style="display:none"><select multiple="multiple">231 <option>cellular_modification_design</option>232 <option>compound_treatment_design</option>233 <option>disease_state_design</option>234 <option>dose_response_design</option>235 <option>genetic_modification_design</option>236 <option>growth_condition_design</option>237 <option>injury_design</option>238 <option>non-targeted_transgenic_variation_design</option>239 <option>pathogenicity_design</option>240 <option>stimulated_design_type</option>241 <option>stimulus_or_stress_design</option>242 <option>unknown_experiment_design_type</option>243 </select></div>244 </td>245 </tr>246 247 <tr class="noBorder">248 <td>Technological Design</td>249 <td><a onclick="showHideItems('TechnologicalDesign', 'buttonTechnologicalDesign');" title="Show/hide items">250 <img src="show.gif" border="0" id="buttonTechnologicalDesign" name="TechnologicalDesign" /></a> <!-- begin div containing hidden items -->251 <div id="TechnologicalDesign" style="display:none"><select multiple="multiple">252 <option>binding_site_identification_design</option>253 <option>cellular_modification_design</option>254 <option>comparative_genome_hybridization_design</option>255 <option>transcript_identification_design</option>256 </option>257 </select></div>258 </td>259 </tr>260 261 94 </table> 262 263 95 </div> 264 96 </td> 265 <td>A list of terms taken from the MGED ontology. Multiple values can be selected. 266 <p>Click "expand" for an item to see list boxes with specific choices.<br> 267 Hold down the 'Ctrl' key and click to select multiple options. 268 </td> 97 98 <td class="helpText">Please select an existing array design from BASE or create a 99 new one. For ArrayExpress submissions, the array design name becomes 100 the array accession identifier. Accession numbers for experiments 101 submitted to ArrayExpress should have the format E-XXXX-n.</td> 102 269 103 </tr> 270 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 271 <tr> 272 <td class="boldText">Experiment Name:</td> 273 <td class="input"> 274 <textarea rows="2" cols="30" name="experimentName">my first experiment</textarea> 275 </td> 276 <td>The name you have chosen for the Experiment.</td> 277 </tr> 278 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 279 <tr> 280 <td class="boldText">Experiment Description:</td> 281 <td class="input"> 282 <textarea rows="2" cols="30" name="description">description</textarea> 283 </td> 284 <td>A short paragraph describing the purpose of the experiment.</td> 285 </tr> 286 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 287 <tr> 288 <td class="boldText">Release Date:</td> 289 <td class="input"><input type="text" size="10" name="" value="2007-12-03" /></td> 290 <td>Date for public release, in the format YYYY-MM-DD.</td> 291 </tr> 292 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 293 <tr> 294 <td class="boldText">Submission Date:</td> 295 <td class="input"><input type="text" size="10" name="submissionDate" value="2007-12-03" /></td> 296 <td>Date of submission, in the format YYYY-MM-DD.</td> 297 </tr> 298 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 299 <tr> 300 <td class="boldText">Submitter:</td> 301 <td class="input"><input type="text" size="45" name="submitter" value="Micha Bayer" /></td> 302 <td>The name of the person responsible for submitting the experiment to the database.</td> 303 </tr> 304 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 305 <tr> 306 <td class="boldText">Organization:</td> 307 <td class="input"><input type="text" size="45" name="organization" value="SCRI" /></td> 308 <td>The organization to which the submitter is affiliated.</td> 309 </tr> 310 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 311 312 <tr class="noBorder"> 313 <td class="boldText">Publication Details:</td> 314 <td class="input"></td> 315 <td></td> 316 </tr> 317 318 <tr class="noBorder"> 319 <td>Title:</td> 320 <td class="input"><textarea rows="2" cols="30" name="publicationTitle">publicationTitle</textarea></td> 321 322 <td rowspan="4">Publication details for any manuscript associated with the experiment. The journal field should 323 contain a standard Pubmed journal abbreviated name. The authors list is a semicolon-delimited list of names.</td> 324 </tr> 325 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 326 <tr class="noBorder"> 327 <td>Authors:</td> 328 <td class="input"><textarea rows="2" cols="30" name="authors">authors</textarea></td> 329 <td></td> 330 </tr> 104 105 106 331 107 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 332 <tr class="noBorder"> 333 <td>Journal:</td> 334 <td class="input"><textarea rows="2" cols="30" name="journal">journal</textarea></td> 335 <td></td> 336 </tr> 337 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 338 <tr class="noBorder"> 339 <td>Volume:</td> 340 <td class="input"><input type="text" size="10" name="volume" value="" /></td> 341 <td></td> 342 </tr> 343 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 344 <tr class="noBorder"> 345 <td>Issue:</td> 346 <td class="input"><input type="text" size="10" name="issue" value="" /></td> 347 <td></td> 348 </tr> 349 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 350 <tr class="noBorder"> 351 <td>Pages:</td> 352 <td class="input"><input type="text" size="10" name="pages" value="" /></td> 353 <td></td> 354 </tr> 355 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 356 <tr class="noBorder"> 357 <td>Year:</td> 358 <td class="input"><input type="text" size="10" name="year" value="" /></td> 359 <td></td> 360 </tr> 361 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 362 <tr class="noBorder"> 363 <td>Pubmed ID:</td> 364 <td class="input"><input type="text" size="30" name="pubmedId" value="" /></td> 365 <td></td> 366 367 </tr> 368 369 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 370 </table> 371 108 <tr > 109 <td class="boldText">Quality Control:</td> 110 <td class="input"><select multiple name="qualityControl"> 111 <option selected="selected">biological replicate</option> 112 <option>dye swap quality control</option> 113 <option>peer review quality control</option> 114 <option>real time PCR quality control</option> 115 <option>reverse transcription PCR quality control</option> 116 <option selected="selected">spike quality control</option> 117 <option>technical replicate</option> 118 </select></td> 119 <td class="helpText">A list of terms taken from the <a 120 href="http://mged.sourceforge.net/ontologies/MGEDontology.php" 121 target="_blank">MGED ontology</a>. Multiple values can be selected 122 by holding down the Ctrl key and clicking on items.</td> 123 </tr> 124 125 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 126 <tr> 127 <td class="boldText">Experiment Design Type:</td> 128 <td class="input"> 129 130 <table class="noBorder" cellpadding="3"> 131 132 <tr> 133 <td valign="top" style="border-style: none;">Biological Property<br /> 134 </td> 135 <td colspan="2" style="border-style: none;"><a 136 onclick="showHideItems('BiologicalProperty', 'buttonBiologicalProperty');" 137 title="Show/hide items"> <img 138 src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" 139 border="0" id="buttonBiologicalProperty" 140 name="buttonBiologicalProperty" /></a> <!-- begin div containing hidden items --> 141 <div id="BiologicalProperty" style="display:none"><select 142 multiple="multiple" name="biologicalProperty"> 143 <option selected="selected">cell_component_comparison_design</option> 144 <option>cell_cycle_design</option> 145 <option>cell_type_comparison_design</option> 146 <option>cellular_process_design</option> 147 <option>development_or_differentiation_design</option> 148 <option>imprinting_design</option> 149 <option>individual_genetic_characteristics_design</option> 150 <option>innate_behavior_design</option> 151 <option>is_expressed_design</option> 152 <option>organism_part_comparison_design</option> 153 <option>organism_status_design</option> 154 <option>physiological_process_design</option> 155 <option>sex_design</option> 156 <option>species_design</option> 157 <option>strain_or_line_design</option> 158 <option>unknown_experiment_design_type</option> 159 </select></div> 160 </td> 161 </tr> 162 163 <tr> 164 <td style="border-style: none;">BioMolecular Annotation</td> 165 <td style="border-style: none;"><a 166 onclick="showHideItems('BioMolecularAnnotation', 'buttonBioMolecularAnnotation');" 167 title="Show/hide items"> <img 168 src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" 169 border="0" id="buttonBioMolecularAnnotation" 170 name="buttonBioMolecularAnnotation" /></a> <!-- begin div containing hidden items --> 171 <div id="BioMolecularAnnotation" style="display:none"><select 172 multiple="multiple" name="bioMolecularAnnotation"> 173 <option selected="selected">RNA_stability_design</option> 174 <option>binding_site_identification_design</option> 175 <option>co-expression_design</option> 176 <option>comparative_genome_hybridization_design</option> 177 <option>genotyping_design</option> 178 <option>operon_identification_design</option> 179 <option>secreted_protein_identification_design</option> 180 <option>tiling_path_design</option> 181 <option>transcript_identification_design</option> 182 <option>translational_bias_design</option> 183 <option>unknown_experiment_design_type</option> 184 </select></div> 185 </td> 186 </tr> 187 188 <tr> 189 <td style="border-style: none;">Epidemiological Design</td> 190 <td style="border-style: none;"><a 191 onclick="showHideItems('EpidemiologicalDesign', 'buttonEpidemiologicalDesign');" 192 title="Show/hide items"> <img 193 src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" 194 border="0" id="buttonEpidemiologicalDesign" 195 name="buttonEpidemiologicalDesign" /></a> <!-- begin div containing hidden items --> 196 <div id="EpidemiologicalDesign" style="display:none"><select 197 multiple="multiple" name="epidemiologicalDesign"> 198 <option>clinical_history_design</option> 199 <option>disease_state_design</option> 200 <option selected="selected">family_history_design</option> 201 <option>unknown_experiment_design_type</option> 202 </select></div> 203 </td> 204 </tr> 205 206 <tr> 207 <td style="border-style: none;">Methodological Design</td> 208 <td style="border-style: none;"><a 209 onclick="showHideItems('MethodologicalDesign', 'buttonMethodologicalDesign');" 210 title="Show/hide items"> <img 211 src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" 212 border="0" id="buttonMethodologicalDesign" 213 name="buttonMethodologicalDesign" /></a> <!-- begin div containing hidden items --> 214 <div id="MethodologicalDesign" style="display:none"><select 215 multiple="multiple" name="methodologicalDesign"> 216 <option>all_pairs</option> 217 <option>array_platform_variation_design</option> 218 <option>dye_swap_design</option> 219 <option>ex_vivo_design</option> 220 <option>hardware_variation_design</option> 221 <option>in_vitro_design</option> 222 <option>in_vivo_design</option> 223 <option>loop_design</option> 224 <option>normalization_testing_design</option> 225 <option>operator_variation_design</option> 226 <option>optimization_design</option> 227 <option>quality_control_testing_design</option> 228 <option>reference_design</option> 229 <option>replicate_design</option> 230 <option>self_vs_self_design</option> 231 <option>software_variation_design</option> 232 <option>time_series_design</option> 233 <option>unknown_experiment_design_type</option> 234 </select></div> 235 </td> 236 </tr> 237 238 <tr> 239 <td style="border-style: none;">Perturbational Design</td> 240 <td style="border-style: none;"><a 241 onclick="showHideItems('PerturbationalDesign', 'buttonPerturbationalDesign');" 242 title="Show/hide items"> <img 243 src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" 244 border="0" id="buttonPerturbationalDesign" 245 name="buttonPerturbationalDesign" /></a> <!-- begin div containing hidden items --> 246 <div id="PerturbationalDesign" style="display:none"><select 247 multiple="multiple" name="perturbationalDesign"> 248 <option>cellular_modification_design</option> 249 <option>compound_treatment_design</option> 250 <option>disease_state_design</option> 251 <option>dose_response_design</option> 252 <option>genetic_modification_design</option> 253 <option>growth_condition_design</option> 254 <option>injury_design</option> 255 <option>non-targeted_transgenic_variation_design</option> 256 <option>pathogenicity_design</option> 257 <option>stimulated_design_type</option> 258 <option>stimulus_or_stress_design</option> 259 <option>unknown_experiment_design_type</option> 260 </select></div> 261 </td> 262 </tr> 263 264 <tr> 265 <td style="border-style: none;">Technological Design</td> 266 <td style="border-style: none;"><a 267 onclick="showHideItems('TechnologicalDesign', 'buttonTechnologicalDesign');" 268 title="Show/hide items"> <img 269 src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" 270 border="0" id="buttonTechnologicalDesign" 271 name="TechnologicalDesign" /></a> <!-- begin div containing hidden items --> 272 <div id="TechnologicalDesign" style="display:none"><select 273 multiple="multiple" name="technologicalDesign"> 274 <option>binding_site_identification_design</option> 275 <option>cellular_modification_design</option> 276 <option>comparative_genome_hybridization_design</option> 277 <option>transcript_identification_design</option> 278 </select></div> 279 </td> 280 </tr> 281 282 </table> 283 284 285 </td> 286 <td class="helpText">A list of terms taken from the <a 287 href="http://mged.sourceforge.net/ontologies/MGEDontology.php" 288 target="_blank">MGED ontology</a>. 289 <p>Click "expand" for an item to see list boxes with specific 290 choices.<br /> 291 <br /> 292 Multiple values can be selected by holding down the Ctrl key and 293 clicking on items. 294 </td> 295 </tr> 296 297 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 298 <tr> 299 <td class="boldText">Experiment Name:</td> 300 <td class="input"><textarea rows="2" cols="30" 301 name="experimentName"><%=expName %></textarea></td> 302 <td class="helpText">The name you have chosen for the Experiment.</td> 303 </tr> 304 305 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 306 <tr> 307 <td class="boldText">Experiment Description:</td> 308 <td class="input"><textarea rows="2" cols="30" 309 name="description">description goes here</textarea></td> 310 <td class="helpText">A short paragraph describing the purpose of the experiment.</td> 311 </tr> 312 313 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 314 <tr> 315 <td class="boldText">Release Date:</td> 316 <td class="input"><input type="text" size="10" 317 name="releaseDate" value="2007-12-03" /></td> 318 <td class="helpText">Date for public release, in the format YYYY-MM-DD.</td> 319 </tr> 320 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 321 <tr> 322 <td class="boldText">Submission Date:</td> 323 <td class="input"><input type="text" size="10" 324 name="submissionDate" value="2007-12-03" /></td> 325 <td class="helpText">Date of submission, in the format YYYY-MM-DD.</td> 326 </tr> 327 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 328 <tr> 329 <td class="boldText">Submitter:</td> 330 <td class="input"><input type="text" size="45" name="submitter" 331 value="Joe Bloggs" /></td> 332 <td class="helpText">The name of the person responsible for submitting the 333 experiment to the database.</td> 334 </tr> 335 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 336 <tr> 337 <td class="boldText">Organization:</td> 338 <td class="input"><input type="text" size="45" 339 name="organization" value="SCRI" /></td> 340 <td class="helpText">The organization to which the submitter is affiliated.</td> 341 </tr> 342 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 343 344 <tr> 345 <td class="boldText">Publication Details:</td> 346 <td class="input"></td> 347 <td class="helpText">Publication details for any manuscript 348 associated with the experiment.</td> 349 </tr> 350 351 <tr> 352 <td class="plainLabel" style="border-style: none;">Title:</td> 353 <td class="input" style="border-style: none;"><textarea rows="2" cols="30" 354 name="publicationTitle" >My Ropey Paper</textarea></td> 355 <td style="border-style: none;"></td> 356 </tr> 357 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 358 <tr> 359 <td class="plainLabel" style="border-style: none;">Authors:</td> 360 <td class="input" style="border-style: none;"><textarea rows="2" cols="30" name="authors">Bloggs, Joe</textarea></td> 361 <td class="helpText" style="border-style: none;">The authors list is a semicolon-delimited list of names.</td> 362 </tr> 363 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 364 <tr> 365 <td class="plainLabel" style="border-style: none;">Journal:</td> 366 <td class="input" style="border-style: none;"><textarea rows="2" cols="30" name="journal">The Journal of Irreproducible Results</textarea></td> 367 <td class="helpText" style="border-style: none;">The journal field should contain a standard Pubmed journal 368 abbreviated name. </td> 369 </tr> 370 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 371 <tr> 372 <td class="plainLabel" style="border-style: none;">Volume:</td> 373 <td class="input" style="border-style: none;"><input type="text" size="10" name="volume" 374 value="5" /></td> 375 <td style="border-style: none;"></td> 376 </tr> 377 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 378 <tr> 379 <td class="plainLabel" style="border-style: none;">Issue:</td> 380 <td class="input" style="border-style: none;"><input type="text" size="10" name="issue" 381 value="2" /></td> 382 <td style="border-style: none;"></td> 383 </tr> 384 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 385 <tr> 386 <td class="plainLabel" style="border-style: none;">Pages:</td> 387 <td class="input" style="border-style: none;"><input type="text" size="10" name="pages" 388 value="1234-1235" /></td> 389 <td style="border-style: none;"></td> 390 </tr> 391 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 392 <tr> 393 <td class="plainLabel" style="border-style: none;">Year:</td> 394 <td class="input" style="border-style: none;"><input type="text" size="10" name="year" 395 value="2007" /></td> 396 <td style="border-style: none;"></td> 397 </tr> 398 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 399 <tr> 400 <td class="plainLabel" style="border-style: none;">Pubmed ID:</td> 401 <td class="input" style="border-style: none;"><input type="text" size="30" name="pubmedId" 402 value="11009762" /></td> 403 <td style="border-style: none;"></td> 404 405 </tr> 406 407 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 408 </table> 372 409 <p> 373 410 -
branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/experiment.jsp
r523 r524 8 8 <jsp:setProperty name="inputDataBean" property="*"/> 9 9 10 <% 11 final SessionControl sc = Base.getExistingSessionControl(pageContext, true); 12 final String ID = sc.getId(); 13 final String requestID = request.getParameter("requestId"); 14 15 //we also need to figure out the name/id of the currently selected experiment that this import is getting initiated from 16 ItemContext cc = sc.getCurrentContext(Item.EXPERIMENT); 17 int experimentID = cc.getId(); 18 DbControl dc = sc.newDbControl(); 19 Experiment experiment = Experiment.getById(dc,experimentID); 20 String expName = experiment.getName(); 21 dc.close(); 22 23 //set the experiment id in the bean so we can get at it later in the plugin 24 inputDataBean.setExperimentId(new Integer(experimentID).toString()); 25 %> 10 26 11 27 <html> … … 27 43 { 28 44 var frm = document.forms['experimentData']; 29 var url = '<%= request.getContextPath()%>/lims/arraydesigns/index.jsp?ID= b8c5fcee801ca39c&cmd=UpdateContext&mode=selectone&callback=setArrayDesignCallback';45 var url = '<%= request.getContextPath()%>/lims/arraydesigns/index.jsp?ID=<%=ID%>&cmd=UpdateContext&mode=selectone&callback=setArrayDesignCallback'; 30 46 if (frm.accession.length > 0) 31 47 { … … 100 116 101 117 102 <% 103 final SessionControl sc = Base.getExistingSessionControl(pageContext, true); 104 final String ID = sc.getId(); 105 final String requestID = request.getParameter("requestId"); 106 107 //we also need to figure out the name/id of the currently selected experiment that this import is getting initiated from 108 ItemContext cc = sc.getCurrentContext(Item.EXPERIMENT); 109 int experimentID = cc.getId(); 110 DbControl dc = sc.newDbControl(); 111 Experiment experiment = Experiment.getById(dc,experimentID); 112 String expName = experiment.getName(); 113 dc.close(); 114 115 //set the experiment id in the bean so we can get at it later in the plugin 116 inputDataBean.setExperimentId(new Integer(experimentID).toString()); 117 %> 118 118 119 119 120 … … 130 131 <input type="hidden" name="ID" value="<%=ID%>"> 131 132 132 <table cellpadding=" 10">133 <table cellpadding="0" cellspacing="0"> 133 134 134 135 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 135 <tr class="border">136 <tr > 136 137 <td class="boldText">Domain:</td> 137 138 <td class="input"><input type="text" size="45" name="domain" value="scri.ac.uk" /></td> 138 <td >The domain tag provides information on the originator of the output MAGE-ML document. This field can contain139 <td class="helpText">The domain tag provides information on the originator of the output MAGE-ML document. This field can contain 139 140 any suitable string, such as the originating internet domain name (e.g. "ebi.ac.uk").</td> 140 141 </tr> 141 142 142 143 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 143 <tr class="border">144 <tr > 144 145 <td class="boldText">Array Acession:</td> 145 146 … … 149 150 <table class="noBorder" cellspacing="0" cellpadding="5"> 150 151 <tr class="noBorder"> 151 <td ><select name="accession" onchange="arrayDesignOnChange()"></select></td>152 <td >152 <td style="border-style: none;"><select name="accession" onchange="arrayDesignOnChange()"></select></td> 153 <td style="border-style: none;"> 153 154 <div class="buttonclass" 154 155 onmouseover="this.className='buttonclass_hover';" … … 163 164 </td> 164 165 165 <td >Please select an existing array design from BASE or create a166 <td class="helpText">Please select an existing array design from BASE or create a 166 167 new one. For ArrayExpress submissions, the array design name becomes 167 168 the array accession identifier. Accession numbers for experiments … … 171 172 172 173 173 <tr>174 174 175 175 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 176 176 <tr > 177 177 <td class="boldText">Quality Control:</td> 178 <td class="input"><select multiple name="qualityControl" >178 <td class="input"><select multiple name="qualityControl" size="7"> 179 179 <option selected="selected">biological replicate</option> 180 180 <option>dye swap quality control</option> … … 185 185 <option>technical replicate</option> 186 186 </select></td> 187 <td >A list of terms taken from the <a187 <td class="helpText">A list of terms taken from the <a 188 188 href="http://mged.sourceforge.net/ontologies/MGEDontology.php" 189 189 target="_blank">MGED ontology</a>. Multiple values can be selected … … 198 198 <table class="noBorder" cellpadding="3"> 199 199 200 <tr class="noBorder">201 <td valign="top" >Biological Property<br />202 </td> 203 <td colspan="2" ><a200 <tr> 201 <td valign="top" style="border-style: none;">Biological Property<br /> 202 </td> 203 <td colspan="2" style="border-style: none;"><a 204 204 onclick="showHideItems('BiologicalProperty', 'buttonBiologicalProperty');" 205 205 title="Show/hide items"> <img … … 208 208 name="buttonBiologicalProperty" /></a> <!-- begin div containing hidden items --> 209 209 <div id="BiologicalProperty" style="display:none"><select 210 multiple="multiple" name="biologicalProperty" >210 multiple="multiple" name="biologicalProperty" size="16"> 211 211 <option selected="selected">cell_component_comparison_design</option> 212 212 <option>cell_cycle_design</option> … … 229 229 </tr> 230 230 231 <tr class="noBorder">232 <td >BioMolecular Annotation</td>233 <td ><a231 <tr> 232 <td style="border-style: none;">BioMolecular Annotation</td> 233 <td style="border-style: none;"><a 234 234 onclick="showHideItems('BioMolecularAnnotation', 'buttonBioMolecularAnnotation');" 235 235 title="Show/hide items"> <img … … 238 238 name="buttonBioMolecularAnnotation" /></a> <!-- begin div containing hidden items --> 239 239 <div id="BioMolecularAnnotation" style="display:none"><select 240 multiple="multiple" name="bioMolecularAnnotation" >240 multiple="multiple" name="bioMolecularAnnotation" size="11"> 241 241 <option selected="selected">RNA_stability_design</option> 242 242 <option>binding_site_identification_design</option> … … 254 254 </tr> 255 255 256 <tr class="noBorder">257 <td >Epidemiological Design</td>258 <td ><a256 <tr> 257 <td style="border-style: none;">Epidemiological Design</td> 258 <td style="border-style: none;"><a 259 259 onclick="showHideItems('EpidemiologicalDesign', 'buttonEpidemiologicalDesign');" 260 260 title="Show/hide items"> <img … … 263 263 name="buttonEpidemiologicalDesign" /></a> <!-- begin div containing hidden items --> 264 264 <div id="EpidemiologicalDesign" style="display:none"><select 265 multiple="multiple" name="epidemiologicalDesign" >265 multiple="multiple" name="epidemiologicalDesign" size="4"> 266 266 <option>clinical_history_design</option> 267 267 <option>disease_state_design</option> … … 272 272 </tr> 273 273 274 <tr class="noBorder">275 <td >Methodological Design</td>276 <td ><a274 <tr> 275 <td style="border-style: none;">Methodological Design</td> 276 <td style="border-style: none;"><a 277 277 onclick="showHideItems('MethodologicalDesign', 'buttonMethodologicalDesign');" 278 278 title="Show/hide items"> <img … … 281 281 name="buttonMethodologicalDesign" /></a> <!-- begin div containing hidden items --> 282 282 <div id="MethodologicalDesign" style="display:none"><select 283 multiple="multiple" name="methodologicalDesign" >283 multiple="multiple" name="methodologicalDesign" size="18"> 284 284 <option>all_pairs</option> 285 285 <option>array_platform_variation_design</option> … … 304 304 </tr> 305 305 306 <tr class="noBorder">307 <td >Perturbational Design</td>308 <td ><a306 <tr> 307 <td style="border-style: none;">Perturbational Design</td> 308 <td style="border-style: none;"><a 309 309 onclick="showHideItems('PerturbationalDesign', 'buttonPerturbationalDesign');" 310 310 title="Show/hide items"> <img … … 313 313 name="buttonPerturbationalDesign" /></a> <!-- begin div containing hidden items --> 314 314 <div id="PerturbationalDesign" style="display:none"><select 315 multiple="multiple" name="perturbationalDesign" >315 multiple="multiple" name="perturbationalDesign" size="12"> 316 316 <option>cellular_modification_design</option> 317 317 <option>compound_treatment_design</option> … … 330 330 </tr> 331 331 332 <tr class="noBorder">333 <td >Technological Design</td>334 <td ><a332 <tr> 333 <td style="border-style: none;">Technological Design</td> 334 <td style="border-style: none;"><a 335 335 onclick="showHideItems('TechnologicalDesign', 'buttonTechnologicalDesign');" 336 336 title="Show/hide items"> <img 337 337 src="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/show.gif" 338 338 border="0" id="buttonTechnologicalDesign" 339 name=" TechnologicalDesign" /></a> <!-- begin div containing hidden items -->339 name="buttonTechnologicalDesign" /></a> <!-- begin div containing hidden items --> 340 340 <div id="TechnologicalDesign" style="display:none"><select 341 multiple="multiple" name="technologicalDesign" >341 multiple="multiple" name="technologicalDesign" size="4"> 342 342 <option>binding_site_identification_design</option> 343 343 <option>cellular_modification_design</option> … … 352 352 353 353 </td> 354 <td >A list of terms taken from the <a354 <td class="helpText">A list of terms taken from the <a 355 355 href="http://mged.sourceforge.net/ontologies/MGEDontology.php" 356 356 target="_blank">MGED ontology</a>. … … 366 366 <tr> 367 367 <td class="boldText">Experiment Name:</td> 368 <td class="input"><textarea rows=" 2" cols="30"368 <td class="input"><textarea rows="4" cols="30" 369 369 name="experimentName"><%=expName %></textarea></td> 370 <td >The name you have chosen for the Experiment.</td>370 <td class="helpText">The name you have chosen for the Experiment.</td> 371 371 </tr> 372 372 … … 374 374 <tr> 375 375 <td class="boldText">Experiment Description:</td> 376 <td class="input"><textarea rows=" 2" cols="30"376 <td class="input"><textarea rows="4" cols="30" 377 377 name="description">description goes here</textarea></td> 378 <td >A short paragraph describing the purpose of the experiment.</td>378 <td class="helpText">A short paragraph describing the purpose of the experiment.</td> 379 379 </tr> 380 380 … … 384 384 <td class="input"><input type="text" size="10" 385 385 name="releaseDate" value="2007-12-03" /></td> 386 <td >Date for public release, in the format YYYY-MM-DD.</td>386 <td class="helpText">Date for public release, in the format YYYY-MM-DD.</td> 387 387 </tr> 388 388 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> … … 391 391 <td class="input"><input type="text" size="10" 392 392 name="submissionDate" value="2007-12-03" /></td> 393 <td >Date of submission, in the format YYYY-MM-DD.</td>393 <td class="helpText">Date of submission, in the format YYYY-MM-DD.</td> 394 394 </tr> 395 395 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> … … 398 398 <td class="input"><input type="text" size="45" name="submitter" 399 399 value="Joe Bloggs" /></td> 400 <td >The name of the person responsible for submitting the400 <td class="helpText">The name of the person responsible for submitting the 401 401 experiment to the database.</td> 402 402 </tr> … … 406 406 <td class="input"><input type="text" size="45" 407 407 name="organization" value="SCRI" /></td> 408 <td >The organization to which the submitter is affiliated.</td>409 </tr> 410 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 411 412 <tr class="noBorder">408 <td class="helpText">The organization to which the submitter is affiliated.</td> 409 </tr> 410 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 411 412 <tr> 413 413 <td class="boldText">Publication Details:</td> 414 414 <td class="input"></td> 415 <td></td> 416 </tr> 417 418 <tr class="noBorder"> 419 <td>Title:</td> 420 <td class="input"><textarea rows="2" cols="30" 421 name="publicationTitle">My Ropey Paper</textarea></td> 422 423 <td rowspan="4">Publication details for any manuscript 424 associated with the experiment. <p> 425 The authors list is a semicolon-delimited list of names.<p> 426 The journal field should contain a standard Pubmed journal 415 <td class="helpText">Publication details for any manuscript 416 associated with the experiment.</td> 417 </tr> 418 419 <tr> 420 <td class="plainLabel" style="border-style: none;">Title:</td> 421 <td class="input" style="border-style: none;"><textarea rows="3" cols="30" 422 name="publicationTitle" >My Ropey Paper</textarea></td> 423 <td style="border-style: none;"></td> 424 </tr> 425 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 426 <tr> 427 <td class="plainLabel" style="border-style: none;">Authors:</td> 428 <td class="input" style="border-style: none;"><textarea rows="3" cols="30" name="authors">Bloggs, Joe</textarea></td> 429 <td class="helpText" style="border-style: none;">The authors list is a semicolon-delimited list of names.</td> 430 </tr> 431 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 432 <tr> 433 <td class="plainLabel" style="border-style: none;">Journal:</td> 434 <td class="input" style="border-style: none;"><textarea rows="3" cols="30" name="journal">The Journal of Irreproducible Results</textarea></td> 435 <td class="helpText" style="border-style: none;">The journal field should contain a standard Pubmed journal 427 436 abbreviated name. </td> 428 437 </tr> 429 438 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 430 <tr class="noBorder"> 431 <td>Authors:</td> 432 <td class="input"><textarea rows="2" cols="30" name="authors">Bloggs, Joe</textarea></td> 433 <td></td> 434 </tr> 435 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 436 <tr class="noBorder"> 437 <td>Journal:</td> 438 <td class="input"><textarea rows="2" cols="30" name="journal">The Journal of Irreproducible Results</textarea></td> 439 <td></td> 440 </tr> 441 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 442 <tr class="noBorder"> 443 <td>Volume:</td> 444 <td class="input"><input type="text" size="10" name="volume" 439 <tr> 440 <td class="plainLabel" style="border-style: none;">Volume:</td> 441 <td class="input" style="border-style: none;"><input type="text" size="10" name="volume" 445 442 value="5" /></td> 446 <td ></td>447 </tr> 448 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 449 <tr class="noBorder">450 <td >Issue:</td>451 <td class="input" ><input type="text" size="10" name="issue"443 <td style="border-style: none;"></td> 444 </tr> 445 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 446 <tr> 447 <td class="plainLabel" style="border-style: none;">Issue:</td> 448 <td class="input" style="border-style: none;"><input type="text" size="10" name="issue" 452 449 value="2" /></td> 453 <td ></td>454 </tr> 455 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 456 <tr class="noBorder">457 <td >Pages:</td>458 <td class="input" ><input type="text" size="10" name="pages"450 <td style="border-style: none;"></td> 451 </tr> 452 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 453 <tr> 454 <td class="plainLabel" style="border-style: none;">Pages:</td> 455 <td class="input" style="border-style: none;"><input type="text" size="10" name="pages" 459 456 value="1234-1235" /></td> 460 <td ></td>461 </tr> 462 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 463 <tr class="noBorder">464 <td >Year:</td>465 <td class="input" ><input type="text" size="10" name="year"457 <td style="border-style: none;"></td> 458 </tr> 459 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 460 <tr> 461 <td class="plainLabel" style="border-style: none;">Year:</td> 462 <td class="input" style="border-style: none;"><input type="text" size="10" name="year" 466 463 value="2007" /></td> 467 <td ></td>468 </tr> 469 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 470 <tr class="noBorder">471 <td >Pubmed ID:</td>472 <td class="input" ><input type="text" size="30" name="pubmedId"464 <td style="border-style: none;"></td> 465 </tr> 466 <!-- ------------------------------------------------------------------------------------------------------------------------------------------------ --> 467 <tr> 468 <td class="plainLabel" style="border-style: none;">Pubmed ID:</td> 469 <td class="input" style="border-style: none;"><input type="text" size="30" name="pubmedId" 473 470 value="11009762" /></td> 474 <td ></td>471 <td style="border-style: none;"></td> 475 472 476 473 </tr> … … 484 481 <table align="center" class="noBorder" cellspacing="5" cellpadding="5"> 485 482 <tr class="noBorder"> 486 <td id="next" width="50%" ><div 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branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/hybridizations.jsp
r523 r524 20 20 21 21 <link rel="stylesheet" type="text/css" href="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/styles.css" /> 22 22 <link rel="stylesheet" type="text/css" href="/base/include/styles/main.css"> 23 <link rel="stylesheet" type="text/css" href="/base/include/styles/size_m.css"> 23 24 24 25 <script language="JavaScript" src="<%= request.getContextPath()%>/include/scripts/main.js" type="text/javascript"></script> … … 83 84 84 85 85 <h2>Tab2MAGE Importer -- Your Hybridizations</h2> 86 Page 3 of 3 87 <p> 86 88 87 <form name="hybridizations"action="<%= request.getContextPath()%>/common/plugin/index.jsp" method="post"> 89 88 <input type="hidden" name="ID" value="<%=ID%>"> <input type="hidden" name="cmd" value="SetParameters"> … … 123 122 <input type="hidden" name="parameter:zipFile" value="" id="zipFile"> 124 123 125 124 <h2>Tab2MAGE Importer -- Your Hybridizations</h2> 125 Page 3 of 3 126 <p> 126 127 <!-- table with the input form --> 127 128 <table cellpadding="15"> 128 129 129 130 <!-- question 1 --> 130 <tr style="border-color: #6E94B7;border-style: solid;border-width: 1px">131 <tr > 131 132 <td class="boldText">Microarray platform:</td> 132 133 <td class="input"><select name="parameter:platform"> … … 235 236 <tr class="noBorder" > 236 237 237 <td style="vertical-align: middle "><input type="text" name="path" size="35" value=""></td>238 <td style="vertical-align: middle;border-style: none;"><input type="text" name="path" size="35" value=""></td> 238 239 239 <td style="vertical-align: middle ">240 <td style="vertical-align: middle;border-style: none;"> 240 241 <div class="buttons" 241 242 onmouseover="this.className='buttons_hover';" … … 246 247 <table class="noBorder" cellspacing="0" cellpadding="0"> 247 248 <tr class="noBorder"> 248 <td > <img src="/base/images/browse.png" border="0"></td>249 <td >Browse…</td>249 <td style="border-style: none;"> <img src="/base/images/browse.png" border="0"></td> 250 <td style="border-style: none;">Browse…</td> 250 251 </tr> 251 252 </table> … … 269 270 <table align="center" class="noBorder" cellspacing="5" cellpadding="5"> 270 271 <tr class="noBorder"> 271 <td id="next" width="50%" ><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="submit()"><div class="buttons_inner"><table class="noBorder" cellspacing="0" cellpadding="0"><tr class="noBorder"><td><img src="/base/images/gonext.gif" border="0"></td><td>Run Import</td></tr></table></div></div></td>272 <td id="close" width="50%" ><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="window.close()"><div class="buttons_inner"><table class="noBorder" cellspacing="0" cellpadding="0"><tr class="noBorder"><td><img src="/base/images/cancel.gif" border="0"></td><td>Cancel</td></tr></table></div></div></td> </tr>272 <td id="next" width="50%" style="border-style: none;"><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="submit()"><div class="buttons_inner"><table class="noBorder" cellspacing="0" cellpadding="0"><tr class="noBorder"><td style="border-style: none;"><img src="/base/images/gonext.gif" border="0"></td><td style="border-style: none;">Run Import</td></tr></table></div></div></td> 273 <td id="close" width="50%" style="border-style: none;"><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="window.close()"><div class="buttons_inner"><table class="noBorder" cellspacing="0" cellpadding="0"><tr class="noBorder"><td style="border-style: none;"><img src="/base/images/cancel.gif" border="0"></td><td style="border-style: none;">Cancel</td></tr></table></div></div></td> </tr> 273 274 </table> 274 275 -
branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/protocols.jsp
r523 r524 177 177 <table align="center" class="noBorder" cellspacing="5" cellpadding="5"> 178 178 <tr class="noBorder"> 179 <td id="next" width="50%" ><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="submit()"><div class="buttons_inner"><table class="noBorder" cellspacing="0" cellpadding="0"><tr class="noBorder"><td><img src="/base/images/gonext.gif" border="0"></td><td>Next</td></tr></table></div></div></td>180 <td id="close" width="50%" ><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="window.close()"><div class="buttons_inner"><table class="noBorder" cellspacing="0" cellpadding="0"><tr class="noBorder"><td><img src="/base/images/cancel.gif" border="0"></td><td>Cancel</td></tr></table></div></div></td> </tr>179 <td id="next" width="50%" style="border-style: none;"><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="submit()"><div class="buttons_inner"><table class="noBorder" cellspacing="0" cellpadding="0"><tr class="noBorder"><td style="border-style: none;"><img src="/base/images/gonext.gif" border="0"></td><td style="border-style: none;">Next</td></tr></table></div></div></td> 180 <td id="close" width="50%" style="border-style: none;"><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="window.close()"><div class="buttons_inner"><table class="noBorder" cellspacing="0" cellpadding="0"><tr class="noBorder"><td style="border-style: none;"><img src="/base/images/cancel.gif" border="0"></td><td style="border-style: none;">Cancel</td></tr></table></div></div></td> </tr> 181 181 </table> 182 182 -
branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/styles.css
r523 r524 11 11 } 12 12 13 td.header14 {15 vertical-align: top;16 background-color: #F9F7F0;17 }18 19 td.boldText20 {21 font-weight: bold;22 vertical-align: middle;23 color: #274D70;24 }25 26 13 table { 27 14 border-color: #6E94B7; 28 15 border-style: solid; 29 16 border-width: 1px; 30 border-collapse: separate;17 border-collapse: collapse; 31 18 } 32 19 33 20 tr { 34 border-color: #6E94B7;35 border-style: solid;36 border-width: 1px;37 21 vertical-align: middle; 38 22 } 39 23 40 tr.border { 41 border-color: #6E94B7; 42 border-style: solid; 43 border-width: 1px; 24 td { 44 25 vertical-align: middle; 26 text-align: left; 27 align: left; 28 border-top: 1px solid #6E94B7; 45 29 } 46 47 30 48 31 table.noBorder { … … 50 33 } 51 34 52 tr.noBorder { 35 36 td.noBorder { 53 37 border-style: none; 54 vertical-align: middle;55 38 } 56 39 57 td { 58 vertical-align: top; 59 text-align: left; 60 align: left; # 40 td.plainLabel { 41 padding: 10px; 42 } 43 44 td.helpText { 45 padding: 10px; 61 46 } 62 47 … … 70 55 vertical-align: middle; 71 56 text-align: left; 72 align: left; 57 align: left; 73 58 background-color: rgb(240, 240, 240); 59 padding: 10px; 74 60 } 75 61 … … 81 67 } 82 68 69 td.header { 70 vertical-align: top; 71 background-color: #F9F7F0; 72 } 73 74 td.boldText { 75 font-weight: bold; 76 vertical-align: middle; 77 color: #274D70; 78 padding: 10px; 79 } 80 83 81 img { 84 82 vertical-align: middle; 85 83 } 86 84 87 .buttons {85 .buttons { 88 86 background: #E0E0E0; 89 87 border-top: 1px solid #333333; … … 93 91 vertical-align: middle; 94 92 } 95 96 93 97 94 .buttons_inner {
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