Changeset 5722


Ignore:
Timestamp:
Nov 13, 2019, 8:56:17 AM (3 years ago)
Author:
Nicklas Nordborg
Message:

References #1199: Implement Variant calling pipeline

Updated the "Secondary analysis cleanup" wizard to also support VariantCall raw bioassays.

Location:
extensions/net.sf.basedb.reggie/trunk
Files:
3 edited

Legend:

Unmodified
Added
Removed
  • extensions/net.sf.basedb.reggie/trunk/resources/admin/analysis-cleanup.jsp

    r5581 r5722  
    6262        <li>Cufflinks
    6363        <li>StringTie
     64        <li>VariantCall
    6465        </ul>
    6566      </ul>
  • extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/counter/CounterService.java

    r5683 r5722  
    13871387    query.restrict(Restrictions.or(
    13881388        Rawdatatype.CUFFLINKS.restriction(dc, null),
    1389         Rawdatatype.STRINGTIE.restriction(dc, null)
     1389        Rawdatatype.STRINGTIE.restriction(dc, null),
     1390        Rawdatatype.VARIANT_CALL.restriction(dc, null)
    13901391      ));
    13911392    json.put("analysis-cleanup-rba", query.count(dc));
  • extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/servlet/AdminServlet.java

    r5581 r5722  
    174174        rawQuery.restrict(Restrictions.or(
    175175            Rawdatatype.CUFFLINKS.restriction(dc, null),
    176             Rawdatatype.STRINGTIE.restriction(dc, null)
     176            Rawdatatype.STRINGTIE.restriction(dc, null),
     177            Rawdatatype.VARIANT_CALL.restriction(dc, null)
    177178          ));
    178179       
     
    329330        rbaQuery.restrict(Restrictions.or(
    330331            Rawdatatype.CUFFLINKS.restriction(dc, null),
    331             Rawdatatype.STRINGTIE.restriction(dc, null)
     332            Rawdatatype.STRINGTIE.restriction(dc, null),
     333            Rawdatatype.VARIANT_CALL.restriction(dc, null)
    332334          ));
    333335
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