Changeset 5816

Timestamp:

Jan 28, 2020, 8:54:55 AM (3 years ago)

Author:

Nicklas Nordborg

Message:

References #1225: Update databases used in variant calling pipeline

New path to variant annotation databases.

File:

• extensions/net.sf.basedb.reggie/trunk/config/reggie-config.xml (modified) (1 diff)

extensions/net.sf.basedb.reggie/trunk/config/reggie-config.xml

@@ -347 +347 @@
         <!-- Full path to base directory with databases and other stuff needed by the pipeline -->
         <!-- This value can be used in other options as ${BaseDir} -->
-        <base-dir>${ReferenceDir}/scanb/rnaseqvarcall-nov2019</base-dir>
+        <base-dir>${ReferenceDir}/scanb/rnaseqvarcall-feb2020</base-dir>
         
         <!-- static options for 'mosdepth' for regular and debug modes (optional) -->