Ignore:
Timestamp:
Feb 19, 2020, 3:21:30 PM (2 years ago)
Author:
Nicklas Nordborg
Message:

References #1218: Implement MIPs alignment

Added AnnotateBamWithUmis step.

File:
1 edited

Legend:

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  • extensions/net.sf.basedb.reggie/trunk/config/reggie-config.xml

    r5827 r5829  
    198198          <path>/usr/local/packages/snpeff/4.3s/SnpSift.jar</path>
    199199        </snpsift>
     200        <fgbio>
     201          <!-- full path to the fgbio.jar file (required) -->
     202          <path>/usr/local/packages/fgbio/0.8.1/fgbio.jar</path>
     203        </fgbio>
    200204      </programs>
    201205     
     
    335339        </trimmomatic>
    336340       
     341       
    337342      </align-mips>
    338343     
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