Changeset 5850


Ignore:
Timestamp:
Mar 4, 2020, 8:26:08 AM (3 years ago)
Author:
Nicklas Nordborg
Message:

Fixes #1228: Add file actions for viewing genotype and variant information

Added an extension that add links to file items:

  • variants-filtered.vcf that is attached to a raw bioassay (via VCF file type)
  • qc_genotype.vcf that is attached to a raw bioassay (via any-to-any link)
Location:
extensions/net.sf.basedb.reggie/trunk
Files:
2 added
1 edited

Legend:

Unmodified
Added
Removed

  • extensions/net.sf.basedb.reggie/trunk/META-INF/extensions.xml

    r5849 r5850  
    641641  </extension>
    642642 
     643  <extension
     644    id="net.sf.basedb.reggie.vcf-actions"
     645    extends="net.sf.basedb.clients.web.file-viewer"
     646    >
     647    <about>
     648      <name>Genotype and variant call VCF viewer</name>
     649      <description>
     650        Add links for viewing the genotype QC VCF (qc_genotype.vcf)
     651        file and the filtered variant call VCF file (variants-filtered.vcf).
     652      </description>
     653    </about>
     654    <action-factory>
     655      <factory-class>
     656        net.sf.basedb.reggie.extensions.VcfViewerActionFactory
     657      </factory-class>
     658      <parameters>
     659        <script>~/scripts/vcf-actions.js</script>
     660      </parameters>
     661    </action-factory>
     662  </extension>
     663 
    643664</extensions>
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