Changeset 5934 for other

Timestamp:

May 8, 2020, 1:56:44 PM (2 years ago)

Author:

Nicklas Nordborg

Message:

References #1243: Improve status checking for NovaSeq?

Updated the novaseq_status.sh script to include:

• FlowCellMode: (eg. SP or S1, etc.)
• RunInfoDate: Date value from RunInfo.xml converted to same date format as other dates
• TileTags: Number of <Tile> tags in RunInfo.xml

File:

• other/pipeline/trunk/novaseq_status.sh (modified) (2 diffs)

other/pipeline/trunk/novaseq_status.sh

@@ -65 +65 @@
   echo "Index2Read: `grep '<IndexRead2NumberOfCycles>' "${RUN_PARAMETERS}" | cut -d '>' -f 2 | cut -d '<' -f 1`"
   echo "NovaSeqSerial: `grep '<InstrumentName>' "${RUN_PARAMETERS}" | cut -d '>' -f 2 | cut -d '<' -f 1`"
+  echo "FlowCellMode: `grep '<FlowCellMode>' "${RUN_PARAMETERS}" | cut -d '>' -f 2 | cut -d '<' -f 1`"
 fi
 
@@ -83 +84 @@
   echo "SwathCount: `grep -o 'SwathCount="[^"]*"' "${RUN_INFO}" | cut -d '"' -f 2`"
   echo "TileCount: `grep -o 'TileCount="[^"]*"' "${RUN_INFO}" | cut -d '"' -f 2`"
+  echo "TileTags: `grep '<Tile>' "${RUN_INFO}" | wc -l`"
+  RUN_INFO_DATE=`grep '<Date>' "${RUN_INFO}" | cut -d '>' -f 2 | cut -d '<' -f 1`
+  echo "RunInfoDate: `date -d "${RUN_INFO_DATE}" +"${DATE_FORMAT}"`"
 fi