Changeset 6464

Timestamp:

Nov 3, 2021, 1:27:22 PM (15 months ago)

Author:

Nicklas Nordborg

Message:

References #1347: Updates to registration of specimen handled by external lab

Added new plate type "External library strip" and new geometry "1x8".

Location:

extensions/net.sf.basedb.reggie/branches/4.33-stable/src/net/sf/basedb/reggie

Files:

• dao/BioplateType.java (modified) (1 diff)
• dao/Geometry.java (modified) (1 diff)
• servlet/InstallServlet.java (modified) (2 diffs)

extensions/net.sf.basedb.reggie/branches/4.33-stable/src/net/sf/basedb/reggie/dao/BioplateType.java

@@ -109 +109 @@
   /**
     The definition of the "External library plate" type. It is locked to extracts
-    of subtype {@link Subtype#LIBRARY} and uses 8x12 geometry. TODO -- different geometry??
+    of subtype {@link Subtype#LIBRARY} and uses 8x12 geometry.
     @since 2.12
   */
   public static final BioplateType EXTERNAL_LIBRARY =
     new BioplateType("External library plate", Item.EXTRACT, Subtype.LIBRARY, LockMode.LOCKED_AFTER_ADD, Geometry.EIGHT_BY_TWELVE, "ExternalLibPlate", 4);
-    
+  
+  /**
+    The definition of the "External library strip" type. It is locked to extracts
+    of subtype {@link Subtype#LIBRARY} and uses 1x8 geometry.
+    @since 4.33.4
+  */
+  public static final BioplateType EXTERNAL_LIBRARY_STRIP =
+    new BioplateType("External library strip", Item.EXTRACT, Subtype.LIBRARY, LockMode.LOCKED_AFTER_ADD, Geometry.ONE_BY_EIGHT, "ExternalLibStrip", 5);
+
+  
   /**
     The definition of the "MIPs plate" type. It is locked to extracts

extensions/net.sf.basedb.reggie/branches/4.33-stable/src/net/sf/basedb/reggie/dao/Geometry.java

@@ -48 +48 @@
   public static final Geometry ONE_BY_TWELVE = new Geometry("12-well (1 × 12)", 1, 12);
   
+  /**
+    Plate geometry with 1 row and 8 columns.
+    @since 4.33.4
+  */
+  public static final Geometry ONE_BY_EIGHT = new Geometry("8-well (1 × 8)", 1, 8);
+
   /**
     Plate geometry with 8 rows and 2 columns.

extensions/net.sf.basedb.reggie/branches/4.33-stable/src/net/sf/basedb/reggie/servlet/InstallServlet.java

@@ -358 +358 @@
         jsonChecks.add(checkPlateGeometry(dc, Geometry.THREE_BY_TWO, createIfMissing));
         jsonChecks.add(checkPlateGeometry(dc, Geometry.ONE_BY_TWELVE, createIfMissing));
+        jsonChecks.add(checkPlateGeometry(dc, Geometry.ONE_BY_EIGHT, createIfMissing));
         jsonChecks.add(checkPlateGeometry(dc, Geometry.NINE_BY_NINE, createIfMissing));
         jsonChecks.add(checkPlateGeometry(dc, Geometry.EIGHT_BY_TWELVE, createIfMissing));
@@ -373 +374 @@
         jsonChecks.add(checkBioplateType(dc, BioplateType.LIBRARY, createIfMissing));
         jsonChecks.add(checkBioplateType(dc, BioplateType.EXTERNAL_LIBRARY, createIfMissing));
+        jsonChecks.add(checkBioplateType(dc, BioplateType.EXTERNAL_LIBRARY_STRIP, createIfMissing));
         jsonChecks.add(checkBioplateType(dc, BioplateType.NEOPREP, createIfMissing));
         jsonChecks.add(checkBioplateType(dc, BioplateType.MIPS, createIfMissing));