Changeset 6466

Timestamp:

Nov 3, 2021, 3:11:48 PM (15 months ago)

Author:

Nicklas Nordborg

Message:

References #1347: Updates to registration of specimen handled by external lab

Make the FASTQ file size easer to read by using a thousands separator.

File:

• extensions/net.sf.basedb.reggie/branches/4.33-stable/src/net/sf/basedb/reggie/plugins/cmd/FastqInfo.java (modified) (3 diffs)

extensions/net.sf.basedb.reggie/branches/4.33-stable/src/net/sf/basedb/reggie/plugins/cmd/FastqInfo.java

@@ -3 +3 @@
 import java.io.InputStream;
 import java.util.Date;
+import java.util.Locale;
 
 import org.json.simple.JSONObject;
@@ -37 +38 @@
       {
         //R1.md5 = fastq.getOptionalEntry("R1 MD5", PatternValidator.MD5);
-        R1.expectedSize = fastq.getOptionalEntry("R11size", LongValidator.POSITIVE_OR_NULL);
+        R1.expectedSize = fastq.getOptionalEntry("R1size", LongValidator.POSITIVE_OR_NULL);
       }
       if (R2 != null) 
@@ -70 +71 @@
       else if (f.expectedSize != null && f.actualSize != f.expectedSize)
       {
-        section.addErrorMessage("FASTQ file size: "+f.name+"="+f.actualSize+" (expected "+f.expectedSize+" bytes)");
+        section.addErrorMessage("FASTQ file size: "+f.name+"="+String.format(Locale.US, "%,d", f.actualSize)+" bytes (expected "+String.format(Locale.US, "%,d", f.expectedSize)+" bytes)");
       }
     }