Changeset 6477


Ignore:
Timestamp:
Nov 5, 2021, 11:53:20 AM (15 months ago)
Author:
Nicklas Nordborg
Message:

References #1346: Implement support for OncoArray? SNP data

Added Scanner subtype.

Location:
extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie
Files:
2 edited

Legend:

Unmodified
Added
Removed
  • extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/dao/Subtype.java

    r6475 r6477  
    262262  */
    263263  public static final Subtype SCAN = new Subtype("Scan", "Scan", null, null, Item.DERIVEDBIOASSAY, false);
     264
     265  /**
     266    The definition of the "Scanner" hardware type. Should already exist in BASE.
     267    @since 4.34
     268  */
     269  public static final Subtype SCANNER = new Subtype("Scanner", null, null, null, Item.HARDWARE, false);
    264270
    265271  /**
  • extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/servlet/InstallServlet.java

    r6476 r6477  
    313313        jsonChecks.add(checkSubtype(dc, Subtype.FLOW_CELL, null, createIfMissing, Subtype.POOLED_LIBRARY_ALIQUOT, Subtype.CLUSTER_GENERATOR, Subtype.CLUSTER_PROTOCOL));
    314314        jsonChecks.add(checkSubtype(dc, Subtype.BEAD_CHIP, null, createIfMissing, Subtype.BLOOD_DNA));
    315         jsonChecks.add(checkSubtype(dc, Subtype.SCAN, null, createIfMissing, Subtype.BEAD_CHIP));
     315        jsonChecks.add(checkSubtype(dc, Subtype.SCANNER, null, createIfMissing));
     316        jsonChecks.add(checkSubtype(dc, Subtype.SCAN, null, createIfMissing, Subtype.BEAD_CHIP, Subtype.SCANNER));
    316317        jsonChecks.add(checkSubtype(dc, Subtype.GENOTYPING_SOFTWARE, null, createIfMissing));
    317318        jsonChecks.add(jsonSubtype_GENOTYPE_CALL_FILE);
     
    10711072            Annotationtype.ANALYSIS_RESULT,
    10721073            Annotationtype.PIPELINE
     1074          ));
     1075       
     1076        jsonChecks.add(checkAnnotationTypeCategory(dc, Subtype.SCANNER, createIfMissing,
     1077            Annotationtype.SERIAL_NUMBER
    10731078          ));
    10741079
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