Changeset 686


Ignore:
Timestamp:
Apr 30, 2008, 2:48:59 PM (13 years ago)
Author:
Jari Häkkinen
Message:

Addresses #110.

Location:
plugins/base2/net.sf.basedb.illumina/trunk/src/net/sf/basedb/illumina
Files:
3 edited

Legend:

Unmodified
Added
Removed
  • plugins/base2/net.sf.basedb.illumina/trunk/src/net/sf/basedb/illumina/Illumina.java

    r680 r686  
    2727import net.sf.basedb.core.RawDataType;
    2828import net.sf.basedb.core.RawDataTypes;
     29import net.sf.basedb.core.Type;
    2930
    3031
     
    111112   */
    112113  public static final String BGX_VALIDATOR_METADATAREADER = "net.sf.basedb.illumina.filehandler.BgxFileHandler";
    113  
     114
     115  /**
     116     The ID for {@link ExtraValueType} required for Illumina detection
     117     P-value calculations using the DetectionPValue plug-in provided
     118     with this package.
     119   */
     120  public static final String DETECTION_PVALUE_ID = "IlluminaDetectionPValue";
     121
     122  /**
     123     The {@link ExtraValueType} {@link Type} required for Illumina
     124     detection P-value calculations using the DetectionPValue plug-in
     125     provided with this package.
     126   */
     127  public static final Type DETECTION_PVALUE_TYPE = Type.FLOAT;
     128
    114129  /**
    115130    Get the {@link RawDataType} representing the Illumina Bead Summary
  • plugins/base2/net.sf.basedb.illumina/trunk/src/net/sf/basedb/illumina/install/Install.java

    r681 r686  
    267267        if (installDetectionPValue)
    268268        {
    269           createExtraValueType(dc,"IlluminaDetectionPValue",Type.FLOAT,"ExtraVallueType needed for Illumina detection P-value calculations",ignoreExistingItems);
     269          createExtraValueType(dc,Illumina.DETECTION_PVALUE_ID,Illumina.DETECTION_PVALUE_TYPE,
     270                               "ExtraValueType required for Illumina detection P-value calculations",
     271                               ignoreExistingItems);
    270272        }
    271273        if (installScanner)
     
    578580      (
    579581        "installDetectionPValue",
    580         "Create IlluminaDetectionPValue",
    581         "Select '" + YES_OPTION + "' to create an IlluminaDetectionPValue ExtraValueType.",
     582        "Create " + Illumina.DETECTION_PVALUE_ID,
     583        "Select '"+YES_OPTION+"' to create an "+Illumina.DETECTION_PVALUE_ID+" ExtraValueType.",
    582584        installOptionType
    583585      );
  • plugins/base2/net.sf.basedb.illumina/trunk/src/net/sf/basedb/illumina/plugins/DetectionPValue.java

    r681 r686  
    385385        SpotExtraValueBatcher<Float> batcher=
    386386          child.getSpotExtraValueBatcher(Float.class,
    387                                          ExtraValueType.getByExternalId(dc,"IlluminaDetectionPValue"),
     387                                         ExtraValueType.getByExternalId(dc,Illumina.DETECTION_PVALUE_ID),
    388388                                         thisJob);
    389389
Note: See TracChangeset for help on using the changeset viewer.