Changeset 784


Ignore:
Timestamp:
Sep 18, 2008, 9:53:24 PM (13 years ago)
Author:
Jari Häkkinen
Message:

Addresses #129. Changing to GPL3.

Location:
plugins/base1/se.lu.onk.ReplicateError/trunk
Files:
15 edited

Legend:

Unmodified
Added
Removed
  • plugins/base1/se.lu.onk.ReplicateError/trunk/build.xml

    r773 r784  
    1717    The software is distributed in the hope that it will be useful,
    1818    but WITHOUT ANY WARRANTY; without even the implied warranty of
    19     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
     19    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
    2020    General Public License for more details.
    2121
  • plugins/base1/se.lu.onk.ReplicateError/trunk/lib/AAindex.html

    r766 r784  
    11<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Frameset//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-frameset.dtd">
    22
    3 <!-- $Id$ -->
     3<!--
     4    $Id$
     5
     6    Copyright (C) 2005, 2006 Johan Enell
     7    Copyright (C) 2008 Jari Hakkinen
     8
     9    This file is part of the se.lu.onk.ReplicateError plug-in for
     10    BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     11    site is http://base.thep.lu.se
     12
     13    This is free software; you can redistribute it and/or modify it
     14    under the terms of the GNU General Public License as published by
     15    the Free Software Foundation; either version 3 of the License, or
     16    (at your option) any later version.
     17
     18    The software is distributed in the hope that it will be useful,
     19    but WITHOUT ANY WARRANTY; without even the implied warranty of
     20    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     21    General Public License for more details.
     22
     23    You should have received a copy of the GNU General Public License
     24    along with BASE. If not, see <http://www.gnu.org/licenses/>.
     25-->
    426
    527<html>
  • plugins/base1/se.lu.onk.ReplicateError/trunk/lib/AAtabs.html

    r766 r784  
    11<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Frameset//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-frameset.dtd">
    22
    3 <!-- $Id$ -->
     3<!--
     4    $Id$
     5
     6    Copyright (C) 2005, 2006 Johan Enell
     7    Copyright (C) 2008 Jari Hakkinen
     8
     9    This file is part of the se.lu.onk.ReplicateError plug-in for
     10    BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     11    site is http://base.thep.lu.se
     12
     13    This is free software; you can redistribute it and/or modify it
     14    under the terms of the GNU General Public License as published by
     15    the Free Software Foundation; either version 3 of the License, or
     16    (at your option) any later version.
     17
     18    The software is distributed in the hope that it will be useful,
     19    but WITHOUT ANY WARRANTY; without even the implied warranty of
     20    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     21    General Public License for more details.
     22
     23    You should have received a copy of the GNU General Public License
     24    along with BASE. If not, see <http://www.gnu.org/licenses/>.
     25-->
    426
    527<html>
  • plugins/base1/se.lu.onk.ReplicateError/trunk/lib/WAindex.html

    r766 r784  
    11<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Frameset//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-frameset.dtd">
    22
    3 <!-- $Id$ -->
     3<!--
     4    $Id$
     5
     6    Copyright (C) 2005, 2006 Johan Enell
     7    Copyright (C) 2008 Jari Hakkinen
     8
     9    This file is part of the se.lu.onk.ReplicateError plug-in for
     10    BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     11    site is http://base.thep.lu.se
     12
     13    This is free software; you can redistribute it and/or modify it
     14    under the terms of the GNU General Public License as published by
     15    the Free Software Foundation; either version 3 of the License, or
     16    (at your option) any later version.
     17
     18    The software is distributed in the hope that it will be useful,
     19    but WITHOUT ANY WARRANTY; without even the implied warranty of
     20    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     21    General Public License for more details.
     22
     23    You should have received a copy of the GNU General Public License
     24    along with BASE. If not, see <http://www.gnu.org/licenses/>.
     25-->
    426
    527<html>
  • plugins/base1/se.lu.onk.ReplicateError/trunk/lib/WAtabs.html

    r766 r784  
    11<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Frameset//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-frameset.dtd">
    22
    3 <!-- $Id$ -->
     3<!--
     4    $Id$
     5
     6    Copyright (C) 2005, 2006 Johan Enell
     7    Copyright (C) 2008 Jari Hakkinen
     8
     9    This file is part of the se.lu.onk.ReplicateError plug-in for
     10    BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     11    site is http://base.thep.lu.se
     12
     13    This is free software; you can redistribute it and/or modify it
     14    under the terms of the GNU General Public License as published by
     15    the Free Software Foundation; either version 3 of the License, or
     16    (at your option) any later version.
     17
     18    The software is distributed in the hope that it will be useful,
     19    but WITHOUT ANY WARRANTY; without even the implied warranty of
     20    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     21    General Public License for more details.
     22
     23    You should have received a copy of the GNU General Public License
     24    along with BASE. If not, see <http://www.gnu.org/licenses/>.
     25-->
    426
    527<html>
  • plugins/base1/se.lu.onk.ReplicateError/trunk/lib/base.css

    r766 r784  
    1 <!-- $Id$ -->
     1<!--
     2    $Id$
     3
     4    Copyright (C) 2005 Johan Enell
     5
     6    This file is part of the se.lu.onk.ReplicateError plug-in for
     7    BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     8    site is http://base.thep.lu.se
     9
     10    This is free software; you can redistribute it and/or modify it
     11    under the terms of the GNU General Public License as published by
     12    the Free Software Foundation; either version 3 of the License, or
     13    (at your option) any later version.
     14
     15    The software is distributed in the hope that it will be useful,
     16    but WITHOUT ANY WARRANTY; without even the implied warranty of
     17    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     18    General Public License for more details.
     19
     20    You should have received a copy of the GNU General Public License
     21    along with BASE. If not, see <http://www.gnu.org/licenses/>.
     22-->
    223
    324a:active { text-decoration: none; color: #ff5050; }
  • plugins/base1/se.lu.onk.ReplicateError/trunk/lib/runAA

    r766 r784  
    11#!/bin/bash -
    2 
    3 # $Id$
     2#
     3# $Id$
     4#
     5# Copyright (C) 2005 Johan Enell
     6# Copyright (C) 2008 Jari Häkkinen
     7#
     8# This file is part of the se.lu.onk.MergeBioAssay plug-in for
     9# BASE. Available at http://baseplugins.thep.lu.se/ and BASE web site
     10# is http://base.thep.lu.se
     11#
     12# This is free software; you can redistribute it and/or modify it
     13# under the terms of the GNU General Public License as published by
     14# the Free Software Foundation; either version 3 of the License, or
     15# (at your option) any later version.
     16#
     17# The software is distributed in the hope that it will be useful, but
     18# WITHOUT ANY WARRANTY; without even the implied warranty of
     19# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     20# General Public License for more details.
     21#
     22# You should have received a copy of the GNU General Public License
     23# along with BASE. If not, see <http://www.gnu.org/licenses/>.
     24#
    425
    526progdir="`dirname \"$0\"`"
  • plugins/base1/se.lu.onk.ReplicateError/trunk/lib/runWA

    r766 r784  
    11#!/bin/bash -
    2 
    3 # $Id$
     2#
     3# $Id$
     4#
     5# Copyright (C) 2005 Johan Enell
     6# Copyright (C) 2008 Jari Häkkinen
     7#
     8# This file is part of the se.lu.onk.MergeBioAssay plug-in for
     9# BASE. Available at http://baseplugins.thep.lu.se/ and BASE web site
     10# is http://base.thep.lu.se
     11#
     12# This is free software; you can redistribute it and/or modify it
     13# under the terms of the GNU General Public License as published by
     14# the Free Software Foundation; either version 3 of the License, or
     15# (at your option) any later version.
     16#
     17# The software is distributed in the hope that it will be useful, but
     18# WITHOUT ANY WARRANTY; without even the implied warranty of
     19# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     20# General Public License for more details.
     21#
     22# You should have received a copy of the GNU General Public License
     23# along with BASE. If not, see <http://www.gnu.org/licenses/>.
     24#
    425
    526progdir="`dirname \"$0\"`"
  • plugins/base1/se.lu.onk.ReplicateError/trunk/src/replicateerror/AcrossAssays/HTML.java

    • Property svn:keywords set to Id
    r149 r784  
    11/*
    2  * plugins
    3  * Copyright (C) 2005 Johan Enell
    4  *
    5  * This program is free software; you can redistribute it and/or
    6  * modify it under the terms of the GNU General Public License
    7  * as published by the Free Software Foundation; either version 2
    8  * of the License, or (at your option) any later version.
    9  *
    10  * This program is distributed in the hope that it will be useful,
    11  * but WITHOUT ANY WARRANTY; without even the implied warranty of
    12  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    13  * GNU General Public License for more details.
    14  *
    15  * You should have received a copy of the GNU General Public License
    16  * along with this program; if not, write to the Free Software
    17  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
    18  */
     2  $Id$
     3
     4  Copyright (C) 2005 Johan Enell
     5
     6  This file is part of the se.lu.onk.ReplicateError plug-in for
     7  BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     8  site is http://base.thep.lu.se
     9
     10  This is free software; you can redistribute it and/or modify it
     11  under the terms of the GNU General Public License as published by
     12  the Free Software Foundation; either version 3 of the License, or
     13  (at your option) any later version.
     14
     15  The software is distributed in the hope that it will be useful, but
     16  WITHOUT ANY WARRANTY; without even the implied warranty of
     17  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     18  General Public License for more details.
     19
     20  You should have received a copy of the GNU General Public License
     21  along with BASE. If not, see <http://www.gnu.org/licenses/>.
     22*/
    1923package replicateerror.AcrossAssays;
    2024
  • plugins/base1/se.lu.onk.ReplicateError/trunk/src/replicateerror/AcrossAssays/ReplicateErrorAA.java

    • Property svn:keywords set to Id
    r149 r784  
    11/*
    2  * plugins
    3  * Copyright (C) 2005 Johan Enell
    4  *
    5  * This program is free software; you can redistribute it and/or
    6  * modify it under the terms of the GNU General Public License
    7  * as published by the Free Software Foundation; either version 2
    8  * of the License, or (at your option) any later version.
    9  *
    10  * This program is distributed in the hope that it will be useful,
    11  * but WITHOUT ANY WARRANTY; without even the implied warranty of
    12  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    13  * GNU General Public License for more details.
    14  *
    15  * You should have received a copy of the GNU General Public License
    16  * along with this program; if not, write to the Free Software
    17  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
    18  */
     2  $Id$
     3
     4  Copyright (C) 2005 Johan Enell
     5
     6  This file is part of the se.lu.onk.ReplicateError plug-in for
     7  BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     8  site is http://base.thep.lu.se
     9
     10  This is free software; you can redistribute it and/or modify it
     11  under the terms of the GNU General Public License as published by
     12  the Free Software Foundation; either version 3 of the License, or
     13  (at your option) any later version.
     14
     15  The software is distributed in the hope that it will be useful, but
     16  WITHOUT ANY WARRANTY; without even the implied warranty of
     17  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     18  General Public License for more details.
     19
     20  You should have received a copy of the GNU General Public License
     21  along with BASE. If not, see <http://www.gnu.org/licenses/>.
     22*/
    1923package replicateerror.AcrossAssays;
    2024
  • plugins/base1/se.lu.onk.ReplicateError/trunk/src/replicateerror/R.java

    • Property svn:keywords set to Id
    r149 r784  
    11/*
    2  * plugins
    3  * Copyright (C) 2005 Johan Enell
    4  *
    5  * This program is free software; you can redistribute it and/or
    6  * modify it under the terms of the GNU General Public License
    7  * as published by the Free Software Foundation; either version 2
    8  * of the License, or (at your option) any later version.
    9  *
    10  * This program is distributed in the hope that it will be useful,
    11  * but WITHOUT ANY WARRANTY; without even the implied warranty of
    12  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    13  * GNU General Public License for more details.
    14  *
    15  * You should have received a copy of the GNU General Public License
    16  * along with this program; if not, write to the Free Software
    17  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
    18  */
     2  $Id$
     3
     4  Copyright (C) 2005 Johan Enell
     5
     6  This file is part of the se.lu.onk.ReplicateError plug-in for
     7  BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     8  site is http://base.thep.lu.se
     9
     10  This is free software; you can redistribute it and/or modify it
     11  under the terms of the GNU General Public License as published by
     12  the Free Software Foundation; either version 3 of the License, or
     13  (at your option) any later version.
     14
     15  The software is distributed in the hope that it will be useful, but
     16  WITHOUT ANY WARRANTY; without even the implied warranty of
     17  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     18  General Public License for more details.
     19
     20  You should have received a copy of the GNU General Public License
     21  along with BASE. If not, see <http://www.gnu.org/licenses/>.
     22*/
    1923package replicateerror;
    2024
  • plugins/base1/se.lu.onk.ReplicateError/trunk/src/replicateerror/Replicate.java

    • Property svn:keywords set to Id
    r149 r784  
    11/*
    2  * plugins
    3  * Copyright (C) 2005 Johan Enell
    4  *
    5  * This program is free software; you can redistribute it and/or
    6  * modify it under the terms of the GNU General Public License
    7  * as published by the Free Software Foundation; either version 2
    8  * of the License, or (at your option) any later version.
    9  *
    10  * This program is distributed in the hope that it will be useful,
    11  * but WITHOUT ANY WARRANTY; without even the implied warranty of
    12  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    13  * GNU General Public License for more details.
    14  *
    15  * You should have received a copy of the GNU General Public License
    16  * along with this program; if not, write to the Free Software
    17  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
    18  */
     2  $Id$
     3
     4  Copyright (C) 2005 Johan Enell
     5
     6  This file is part of the se.lu.onk.ReplicateError plug-in for
     7  BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     8  site is http://base.thep.lu.se
     9
     10  This is free software; you can redistribute it and/or modify it
     11  under the terms of the GNU General Public License as published by
     12  the Free Software Foundation; either version 3 of the License, or
     13  (at your option) any later version.
     14
     15  The software is distributed in the hope that it will be useful, but
     16  WITHOUT ANY WARRANTY; without even the implied warranty of
     17  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     18  General Public License for more details.
     19
     20  You should have received a copy of the GNU General Public License
     21  along with BASE. If not, see <http://www.gnu.org/licenses/>.
     22*/
    1923package replicateerror;
    2024
  • plugins/base1/se.lu.onk.ReplicateError/trunk/src/replicateerror/ReplicateError.java

    • Property svn:keywords set to Id
    r769 r784  
    11/*
    2  * plugins
    3  * Copyright (C) 2005 Johan Enell
    4  *
    5  * This program is free software; you can redistribute it and/or
    6  * modify it under the terms of the GNU General Public License
    7  * as published by the Free Software Foundation; either version 2
    8  * of the License, or (at your option) any later version.
    9  *
    10  * This program is distributed in the hope that it will be useful,
    11  * but WITHOUT ANY WARRANTY; without even the implied warranty of
    12  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    13  * GNU General Public License for more details.
    14  *
    15  * You should have received a copy of the GNU General Public License
    16  * along with this program; if not, write to the Free Software
    17  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
    18  */
     2  $Id$
     3
     4  Copyright (C) 2005 Johan Enell
     5  Copyright (C) 2008 Jari Häkkinen
     6
     7  This file is part of the se.lu.onk.ReplicateError plug-in for
     8  BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     9  site is http://base.thep.lu.se
     10
     11  This is free software; you can redistribute it and/or modify it
     12  under the terms of the GNU General Public License as published by
     13  the Free Software Foundation; either version 3 of the License, or
     14  (at your option) any later version.
     15
     16  The software is distributed in the hope that it will be useful, but
     17  WITHOUT ANY WARRANTY; without even the implied warranty of
     18  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     19  General Public License for more details.
     20
     21  You should have received a copy of the GNU General Public License
     22  along with BASE. If not, see <http://www.gnu.org/licenses/>.
     23*/
    1924package replicateerror;
    2025
  • plugins/base1/se.lu.onk.ReplicateError/trunk/src/replicateerror/Spot.java

    • Property svn:keywords set to Id
    r149 r784  
    11/*
    2  * plugins
    3  * Copyright (C) 2006 Johan Enell
    4  *
    5  * This program is free software; you can redistribute it and/or
    6  * modify it under the terms of the GNU General Public License
    7  * as published by the Free Software Foundation; either version 2
    8  * of the License, or (at your option) any later version.
    9  *
    10  * This program is distributed in the hope that it will be useful,
    11  * but WITHOUT ANY WARRANTY; without even the implied warranty of
    12  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    13  * GNU General Public License for more details.
    14  *
    15  * You should have received a copy of the GNU General Public License
    16  * along with this program; if not, write to the Free Software
    17  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
    18  */
     2  $Id$
     3
     4  Copyright (C) 2005 Johan Enell
     5
     6  This file is part of the se.lu.onk.ReplicateError plug-in for
     7  BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     8  site is http://base.thep.lu.se
     9
     10  This is free software; you can redistribute it and/or modify it
     11  under the terms of the GNU General Public License as published by
     12  the Free Software Foundation; either version 3 of the License, or
     13  (at your option) any later version.
     14
     15  The software is distributed in the hope that it will be useful, but
     16  WITHOUT ANY WARRANTY; without even the implied warranty of
     17  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     18  General Public License for more details.
     19
     20  You should have received a copy of the GNU General Public License
     21  along with BASE. If not, see <http://www.gnu.org/licenses/>.
     22*/
    1923package replicateerror;
    2024
  • plugins/base1/se.lu.onk.ReplicateError/trunk/src/replicateerror/WithinAssays/ReplicateErrorWA.java

    • Property svn:keywords set to Id
    r149 r784  
    11/*
    2  * plugins
    3  * Copyright (C) 2005 Johan Enell
    4  *
    5  * This program is free software; you can redistribute it and/or
    6  * modify it under the terms of the GNU General Public License
    7  * as published by the Free Software Foundation; either version 2
    8  * of the License, or (at your option) any later version.
    9  *
    10  * This program is distributed in the hope that it will be useful,
    11  * but WITHOUT ANY WARRANTY; without even the implied warranty of
    12  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    13  * GNU General Public License for more details.
    14  *
    15  * You should have received a copy of the GNU General Public License
    16  * along with this program; if not, write to the Free Software
    17  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
    18  */
     2  $Id$
     3
     4  Copyright (C) 2005 Johan Enell
     5
     6  This file is part of the se.lu.onk.ReplicateError plug-in for
     7  BASE. Available at http://baseplugins.thep.lu.se/ and BASE web
     8  site is http://base.thep.lu.se
     9
     10  This is free software; you can redistribute it and/or modify it
     11  under the terms of the GNU General Public License as published by
     12  the Free Software Foundation; either version 3 of the License, or
     13  (at your option) any later version.
     14
     15  The software is distributed in the hope that it will be useful, but
     16  WITHOUT ANY WARRANTY; without even the implied warranty of
     17  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
     18  General Public License for more details.
     19
     20  You should have received a copy of the GNU General Public License
     21  along with BASE. If not, see <http://www.gnu.org/licenses/>.
     22*/
    1923package replicateerror.WithinAssays;
    2024
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