Changeset 786

Timestamp:

Sep 18, 2008, 11:00:59 PM (13 years ago)

Author:

Jari Häkkinen

Message:

Addresses #129. Added reference to paper which this plug-in is based on.

File:

• plugins/base1/se.lu.onk.ReplicateError/trunk/README (modified) (3 diffs)

plugins/base1/se.lu.onk.ReplicateError/trunk/README

@@ -3 +3 @@
 = About `se.lu.onk.ReplicateError` =
 
-The `se.lu.onk.ReplicateError` plug-in for BASE is 
+The `se.lu.onk.ReplicateError` plug-in for BASE is an implementation
+of 'Analysis of replicates' in ''Within the fold: assessing
+differential expression measures and reproducibility in microarray
+assays'', Yang IV et al. Genome Biol. 2002 Oct 24;3(11):research0062
+[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12429061 download article].
+Two algorithms are implemented, within assays and across assays.
 
 `se.lu.onk.ReplicateError` is free software. See the file license.txt for
@@ -83 +88 @@
   # wget http://baseplugins.thep.lu.se/.../BaseFile-1.0.tgz
   # wget http://baseplugins.thep.lu.se/.../BaseFile-1.0.tgz.MD5
-  # optionally compare the MD5 sum of the downloaded file and the MD5-file
+  # optionally compare the MD5 sum of the downloaded file and the MD5-file
   # tar zxpf BaseFile-1.0.tgz
   # ln -s BaseFile-1.0 BaseFile
@@ -103 +108 @@
 == Bug Reporting ==
 
-You can report `se.lu.onk.ReplicateError` bugs on 
+You can report `se.lu.onk.ReplicateError` bugs on
 
   http://baseplugins.thep.lu.se/newticket