Changeset 786


Ignore:
Timestamp:
Sep 18, 2008, 11:00:59 PM (13 years ago)
Author:
Jari Häkkinen
Message:

Addresses #129. Added reference to paper which this plug-in is based on.

File:
1 edited

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  • plugins/base1/se.lu.onk.ReplicateError/trunk/README

    r774 r786  
    33= About `se.lu.onk.ReplicateError` =
    44
    5 The `se.lu.onk.ReplicateError` plug-in for BASE is
     5The `se.lu.onk.ReplicateError` plug-in for BASE is an implementation
     6of 'Analysis of replicates' in ''Within the fold: assessing
     7differential expression measures and reproducibility in microarray
     8assays'', Yang IV et al. Genome Biol. 2002 Oct 24;3(11):research0062
     9[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12429061 download article].
     10Two algorithms are implemented, within assays and across assays.
    611
    712`se.lu.onk.ReplicateError` is free software. See the file license.txt for
     
    8388  # wget http://baseplugins.thep.lu.se/.../BaseFile-1.0.tgz
    8489  # wget http://baseplugins.thep.lu.se/.../BaseFile-1.0.tgz.MD5
    85   # optionally compare the MD5 sum of the downloaded file and the MD5-file
     90  # optionally compare the MD5 sum of the downloaded file and the MD5-file
    8691  # tar zxpf BaseFile-1.0.tgz
    8792  # ln -s BaseFile-1.0 BaseFile
     
    103108== Bug Reporting ==
    104109
    105 You can report `se.lu.onk.ReplicateError` bugs on 
     110You can report `se.lu.onk.ReplicateError` bugs on
    106111
    107112  http://baseplugins.thep.lu.se/newticket
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