Changeset 790


Ignore:
Timestamp:
Sep 19, 2008, 11:24:43 AM (13 years ago)
Author:
Jari Häkkinen
Message:

Addresses #129. Added proper publication figure references for the algos.

Location:
plugins/base1/se.lu.onk.ReplicateError/trunk
Files:
3 edited

Legend:

Unmodified
Added
Removed
  • plugins/base1/se.lu.onk.ReplicateError/trunk/README

    r786 r790  
    88assays'', Yang IV et al. Genome Biol. 2002 Oct 24;3(11):research0062
    99[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12429061 download article].
    10 Two algorithms are implemented, within assays and across assays.
     10Two algorithms are implemented, within assays (cf. figure 4 in the
     11publication) and across assays ((cf. figure 5 in the publication).
    1112
    1213`se.lu.onk.ReplicateError` is free software. See the file license.txt for
  • plugins/base1/se.lu.onk.ReplicateError/trunk/lib/pluginConfigurationAA.base

    r771 r790  
    44versionNumber @VERSION@
    55name  Filter: ReplicateError (across assays)
    6 descr Implementation of 'Analysis of replicates' (page 8) (Fig4b page 6)\r\nWithin the fold: assessing differential expression measures and reproducibility in microarray assays.\r\nYang IV et al. Genome Biol. 2002 Oct 24;3(11):research0062. Epub 2002 Oct 24.
     6descr Implementation of 'Analysis of replicates' (cf. figure 5 in the publication)\r\nWithin the fold: assessing differential expression measures and reproducibility in microarray assays.\r\nYang IV et al. Genome Biol. 2002 Oct 24;3(11):research0062. Epub 2002 Oct 24.
    77execName  runAA
    88geneAverages  0
  • plugins/base1/se.lu.onk.ReplicateError/trunk/lib/pluginConfigurationWA.base

    r771 r790  
    44versionNumber @VERSION@
    55name  Filter: ReplicateError (within assays)
    6 descr Implementation of 'Analysis of replicates'\r\nWithin the fold: assessing differential expression measures and reproducibility in microarray assays.\r\nYang IV et al. Genome Biol. 2002 Oct 24;3(11):research0062. Epub 2002 Oct 24.
     6descr Implementation of 'Analysis of replicates' (cf. figure 4 in the publication)\r\nWithin the fold: assessing differential expression measures and reproducibility in microarray assays.\r\nYang IV et al. Genome Biol. 2002 Oct 24;3(11):research0062. Epub 2002 Oct 24.
    77execName  runWA
    88geneAverages  0
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