Changeset 908

Timestamp:

Dec 8, 2008, 10:30:06 PM (14 years ago)

Author:

Jari Häkkinen

Message:

Addresses #50. Running nni with phony weights.

File:

• plugins/base1/se.lu.thep.wenni/trunk/base/base2/WeNNI.java (modified) (2 diffs)

plugins/base1/se.lu.thep.wenni/trunk/base/base2/WeNNI.java

@@ -34 +34 @@
 import net.sf.basedb.core.plugin.Plugin;
 
+import net.sf.basedb.plugins.BioAssaySetExporter;
+
+import java.io.File;
+import java.io.FileOutputStream;
 import java.io.IOException;
+
+import java.sql.SQLException;
 
 import java.util.EnumSet;
@@ -111 +117 @@
     throws InterruptedException, IOException
   {
-    String[] cmd = { "nni", "-h" };
-    execute(cmd);
+    FileOutputStream os = new FileOutputStream(new File(getExecDirectory(),
+                                                        "data.data"));
+    BioAssaySetExporter base=new BioAssaySetExporter();
+    try
+    {
+      base.exportPlainMatrix(sourceBAS, os, null);
+      subprocess_stdout="stdout.txt";
+      String[] cmd = { "nni", "-weight", "data.data" };
+      execute(cmd);
+    }
+    catch (SQLException e)
+    {
+      e.printStackTrace();
+//      response.setError(e.getMessage(), Arrays.asList(e));
+    }
   }