source:

Revision Log Mode:


Legend:

Added
Modified
Copied or renamed
Diff Rev Age Author Log Message
(edit) @1110   14 years Nicklas Nordborg References #218: Proof-of-concept: run a selected GenePattern? module …
(edit) @1109   14 years Nicklas Nordborg References #222: Utility for transfering file between BASE and a …
(edit) @1108   14 years Nicklas Nordborg Fixes #221: Configure GenePattern? server The settings are now saved …
(edit) @1107   14 years Nicklas Nordborg References #222: Utility for transfering file between BASE and a …
(edit) @1106   14 years Nicklas Nordborg Fixes #224: Add a "Test" button on the GenePattern? 'edit server' page …
(edit) @1105   14 years Nicklas Nordborg Ant 1.7 is needed for zip file extraction with the <mapper> element.
(edit) @1104   14 years Nicklas Nordborg References #224: Add a "Test" button on the GenePattern? 'edit server' …
(edit) @1103   14 years Nicklas Nordborg References #223: Add target in build.xml for downloading required …
(edit) @1102   14 years Nicklas Nordborg Fixes #221: Configure GenePattern? server
(edit) @1101   14 years Nicklas Nordborg Preparing for future release 1.4
(edit) @1100   14 years Nicklas Nordborg Tagging version 1.3
(edit) @1099   14 years Nicklas Nordborg Preparing for release 1.3
(edit) @1098   14 years Nicklas Nordborg Fixes #220: MeV doesn't download files correctly Added the file id …
(edit) @1097   14 years Martin Svensson References #180. The plot-extension is almost done. How the spot data …
(edit) @1096   14 years Nicklas Nordborg Preparing for future release 1.2
(edit) @1095   14 years Nicklas Nordborg Tagging version 1.1
(edit) @1094   14 years Nicklas Nordborg Preparing for release 1.1
(edit) @1093   14 years Martin Svensson References #182 The information is now inserted in the README file, in …
(edit) @1092   14 years Nicklas Nordborg References #217: GCT exporter Make sure assay names are unique in the …
(edit) @1091   14 years Nicklas Nordborg Fixes #217: GCT exporter
(edit) @1090   14 years Nicklas Nordborg Fixes #216: Setup source code repository for GenePattern? integration
(edit) @1089   14 years Nicklas Nordborg References #216: Setup source code repository for GenePattern? …
(edit) @1088   14 years Nicklas Nordborg References #216: Setup source code repository for GenePattern? integration
(edit) @1087   14 years Martin Svensson Fixes #195 net.sf.basedb.normalizers: Normalizers should ask user for …
(edit) @1086   14 years Nicklas Nordborg References #212: Add support for exporting CGH data to MeV Fixed a …
(edit) @1085   14 years Nicklas Nordborg Fixes #215: BGX reporter importer hangs if the [Controls] section has …
(edit) @1084   14 years Martin Svensson References #195 Updates everything except documentation/wiki, cause …
(edit) @1083   14 years Nicklas Nordborg References #212: Add support for exporting CGH data to MeV I have …
(edit) @1082   14 years Nicklas Nordborg References #212: Add support for exporting CGH data to MeV The …
(edit) @1081   14 years Nicklas Nordborg References #214: Move TDMS export to this extension Logged values can …
(edit) @1080   14 years Jari Häkkinen Changes for future release 0.3
(edit) @1079   14 years Jari Häkkinen Fixes #118. qQuantiler will only show up in proper context and …
(edit) @1078   14 years Jari Häkkinen Tagging version 0.2 of PluginUtilities?.
(edit) @1077   14 years Jari Häkkinen Releasing version 0.2 of PluginUtilities?.
(edit) @1076   14 years Jari Häkkinen Adding context checks for number of channels.
(edit) @1075   14 years Jari Häkkinen Cleaner code, removed unused imports.
(edit) @1074   14 years Jari Häkkinen Addresses #118. Added documentation for qQuantiler.
(edit) @1073   14 years Jari Häkkinen Addresses #118. q=max(10,min(100,target_size/10))
(edit) @1072   14 years Jari Häkkinen Fixing cut&paste typo. Thanks Peter.
(edit) @1071   14 years Nicklas Nordborg References #214: Move TDMS export to this extension Removed …
(edit) @1070   14 years Nicklas Nordborg Fixes #194: Default export file names should be more unique
(edit) @1069   14 years Nicklas Nordborg References #214: Move TDMS export to this extension Removed some …
(edit) @1068   14 years Nicklas Nordborg Fixes #214: Move TDMS export to this extension
(edit) @1067   14 years Jari Häkkinen Addresses #118. Forcing negative and 0 intensities to be NaNs? with 0 …
(edit) @1066   14 years Jari Häkkinen Preparing for next milestone.
(edit) @1065   14 years Jari Häkkinen Reverting changes commit by mistake to README.
(edit) @1064   14 years Jari Häkkinen Addresses #118. Calculate target with median instead of mean.
(edit) @1063   14 years Jari Häkkinen Add qQuantiler to autodetection list.
(edit) @1062   14 years Jari Häkkinen Addresses #118. Added support to use either mean or median in target …
(edit) @1061   14 years Nicklas Nordborg References #214: Move TDMS export to this extension The new exporter …
(edit) @1060   14 years Martin Svensson Fixes #195 Normalizers should ask user for how to calculate averages
(edit) @1059   14 years Jari Häkkinen Use functionality already in yat.
(edit) @1058   14 years Jari Häkkinen The normalizer package now depends in PluginUtilites? version 0.1
(edit) @1057   14 years Jari Häkkinen Tagging version 0.1 of PluginUtilities?
(edit) @1056   14 years Jari Häkkinen Preparing release 0.1 of PluginUtilities? package.
(edit) @1055   14 years Jari Häkkinen Reverting previuos commit on configure.ac, still requiring 0.5.3
(edit) @1054   14 years Jari Häkkinen Cleaned up iterator usage in qQN.cc
(edit) @1053   14 years Jari Häkkinen Addresses #208. Fixing typos.
(edit) @1052   14 years Jari Häkkinen Fixes #208. Reverted changeset:1045 and added requirement on yat 0.5.3.
(edit) @1051   14 years Jari Häkkinen Updated documentation on QuantileNormalization?.
(edit) @1050   14 years Jari Häkkinen Addresses #118. Non-logged input values are expected, geometric mean …
(edit) @1049   14 years Jari Häkkinen Addresses #206. Last commit destroyed nan fixing in changeset:1045 for …
(edit) @1048   14 years Nicklas Nordborg Fixes #213: Cannot save MeV options It was caused by #203 and never …
(edit) @1047   14 years Jari Häkkinen Fixes #206. Missing values in reference now works. Each probe with no …
(edit) @1046   14 years Jari Häkkinen Debugging should be turned if in repository code.
(edit) @1045   14 years Jari Häkkinen Missing values now works with the implemented fix to avoid a bug in …
(edit) @1044   14 years Jari Häkkinen Addresses #118 and #206. If no assay data is given use the average of …
(edit) @1043   14 years Jari Häkkinen Addresses #118 and #206. This code produces the same result as the …
(edit) @1042   14 years Jari Häkkinen Changed qqn package name.
(edit) @1041   14 years Jari Häkkinen Changed qqn package name.
(edit) @1040   14 years Jari Häkkinen Use getCurrentBioAssaySet in configuration phase.
(edit) @1039   14 years Jari Häkkinen Fixes #190. target c++ added.
(edit) @1038   14 years Jari Häkkinen Added some detailed information on detection P-calue plug-in
(edit) @1037   14 years Jari Häkkinen Removed duplicated code block.
(edit) @1036   14 years Jari Häkkinen Fixes #197. Abort functionality implemented.
(edit) @1035   14 years Jari Häkkinen Addresses #197. Abort functionality in place in abstract class.
(edit) @1034   14 years Jari Häkkinen Peter says: Use proper classes
(edit) @1033   14 years Nicklas Nordborg Fixes #200: Change source files to UTF-8
(edit) @1032   14 years Nicklas Nordborg Fixes #202: Change source files to UTF-8
(edit) @1031   14 years Jari Häkkinen Joining Nicklas change to UTF-8 frenzy.
(edit) @1030   14 years Nicklas Nordborg Fixes #199: Change source files to UTF-8
(edit) @1029   14 years Jari Häkkinen Joining Nicklas change to UTF-8 frenzy.
(edit) @1028   14 years Nicklas Nordborg References #203: Change source files to UTF-8 Changed 'Hakkinen' to …
(edit) @1027   14 years Nicklas Nordborg References #198: Change source files to UTF-8 It is safer to set …
(edit) @1026   14 years Nicklas Nordborg Fixes #203: Change source files to UTF-8
(edit) @1025   14 years Nicklas Nordborg Fixes #201: Change source files to UTF-8
(edit) @1024   14 years Nicklas Nordborg Fixes #198: Change source files to UTF-8
(edit) @1023   14 years Jari Häkkinen Addresses #197. In anticipation of abort functionality the underlying …
(edit) @1022   14 years Jari Häkkinen Fixes #184. Progress bar is updated in the abstract class only.
(edit) @1021   14 years Nicklas Nordborg Fixes #189: Add toolbar extension examples
(edit) @1020   14 years Jari Häkkinen Addresses #118 and fixes #187.
(edit) @1019   14 years Nicklas Nordborg References #189: Add toolbar extension examples Added "Annotation …
(edit) @1018   14 years Nicklas Nordborg Changes for future release 1.3
(edit) @1017   14 years Nicklas Nordborg Tagging MeV Launcher 1.2
(edit) @1016   14 years Nicklas Nordborg Preparing release of MeV Launcher 1.2
(edit) @1015   14 years Nicklas Nordborg Fixes #193: Use one JNLP file for each pre-signed JAR file
(edit) @1014   14 years Jari Häkkinen Fixes #191. Added standard options and also assay annotation data file …
(edit) @1013   14 years Nicklas Nordborg Preparing for future release 1.2
(edit) @1012   14 years Nicklas Nordborg Tagging version 1.1
(edit) @1011   14 years Nicklas Nordborg Preparing release 1.1
Note: See TracRevisionLog for help on using the revision log.