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Diff Rev Age Author Log Message
(edit) @1163   14 years Nicklas Nordborg References #242: Implement "Save to BASE" function in the MeV gui The …
(edit) @1162   14 years Nicklas Nordborg Fixes #246: Add MeV Analysis file to list of MIME types
(edit) @1161   14 years Nicklas Nordborg Fixes #241: Add MeV Analysis file as a file type for bioassay sets …
(edit) @1160   14 years Nicklas Nordborg References #241: Add MeV Analysis file as a file type for bioassay …
(edit) @1159   14 years Nicklas Nordborg References #241: Add MeV Analysis file as a file type for bioassay …
(edit) @1158   14 years Nicklas Nordborg Checking in the .classpath file for Eclipse since it is so boring to …
(edit) @1157   14 years Nicklas Nordborg References #241: Add MeV Analysis file as a file type for bioassay …
(edit) @1156   14 years Nicklas Nordborg References #241: Add MeV Analysis file as a file type for bioassay …
(edit) @1155   14 years Nicklas Nordborg Changes for future release 1.5
(edit) @1154   14 years Nicklas Nordborg Tagging MeV launcher 1.4
(edit) @1153   14 years Nicklas Nordborg Preparing release of "MeV launcher 1.4"
(edit) @1152   14 years Nicklas Nordborg Preparing for future release 1.3
(edit) @1151   14 years Nicklas Nordborg Tagging release 1.2
(edit) @1150   14 years Nicklas Nordborg Preparing release of "Extension examples 1.2"
(edit) @1149   14 years Nicklas Nordborg Fixes #240: Bead summary importer should have an option to fail if the …
(edit) @1148   14 years Nicklas Nordborg Fixes #238: Supply plug-in configuration files for MicroRNA files
(edit) @1147   14 years Nicklas Nordborg Fixes #237: Add support for MicroRNA BGX files to reporter importer
(edit) @1146   14 years Nicklas Nordborg Fixes #239: BGX reporter/feature importer auto-detection matches any …
(edit) @1145   14 years Nicklas Nordborg References #226: Update to MeV 4.4 MeV has been updated. Remains to …
(edit) @1144   14 years Martin Svensson References #228 Updated the method that calculates bioassayset's …
(edit) @1143   14 years Martin Svensson References #228 Added parameter to define which average method to use …
(edit) @1142   14 years Martin Svensson Fixes #180 Overview plot extensions for Illumina expression
(edit) @1141   14 years Martin Svensson References #180 The work with the plotting extension is now finished …
(edit) @1140   14 years Nicklas Nordborg Making README a trac wiki page
(edit) @1139   14 years Nicklas Nordborg References #223: Add target in build.xml for downloading required …
(edit) @1138   14 years Nicklas Nordborg References #223: Add target in build.xml for downloading required …
(edit) @1137   14 years Martin Svensson References #180. Some necassary libraries for the JFreePlots.
(edit) @1136   14 years Martin Svensson References #180. Some necassary libraries for the JFreePlots.
(edit) @1135   14 years Martin Svensson References #180 The overview plots are almost finished. Some smaller …
(edit) @1134   14 years Nicklas Nordborg References #234: Proof-of-concept: run a selected GenePattern? …
(edit) @1133   14 years Martin Svensson References #180 Created classes for the control summary plots.
(edit) @1132   14 years Nicklas Nordborg References #234: Proof-of-concept: run a selected GenePattern? …
(edit) @1131   14 years Nicklas Nordborg References #218: Proof-of-concept: run a selected GenePattern? module …
(edit) @1130   14 years Nicklas Nordborg References #229: Implement API for additional GenePattern? web services …
(edit) @1129   14 years Nicklas Nordborg References #222: Utility for transfering file between BASE and a …
(edit) @1128   14 years Nicklas Nordborg References #222, #218, #229. Several changes just to make things work.
(edit) @1127   14 years Nicklas Nordborg References #222: Utility for transfering file between BASE and a …
(edit) @1126   14 years Nicklas Nordborg References #221: Configure GenePattern? server Added field for URL to …
(edit) @1125   14 years Nicklas Nordborg Fixes #233: Add example that uses the alternate approach for invoking …
(edit) @1124   14 years Jari Häkkinen Fixes #231.
(edit) @1123   14 years Jari Häkkinen Fixed CamelCase escape
(edit) @1122   14 years Jari Häkkinen Fixes #227.
(edit) @1121   14 years Jari Häkkinen Fixes #230. Lower limit is now 1.
(edit) @1120   14 years Jari Häkkinen Fixes #232.
(edit) @1119   14 years Nicklas Nordborg References #218: Proof-of-concept: run a selected GenePattern? module …
(edit) @1118   14 years Nicklas Nordborg References #229: Implement API for additional GenePattern? web services …
(edit) @1117   14 years Nicklas Nordborg References #221: Configure GenePattern? server Changed the AJAX calls …
(edit) @1116   14 years Nicklas Nordborg References #222 and #229. File transfer gateway now uses the new wrappers.
(edit) @1115   14 years Nicklas Nordborg References #229: Implement API for additional GenePattern? web services …
(edit) @1114   14 years Jari Häkkinen Addresses #113. The Pvalue calculation is in place. Need to figure …
(edit) @1113   14 years Jari Häkkinen Addresses #227
(edit) @1112   14 years Jari Häkkinen Addresses #227
(edit) @1111   14 years Jari Häkkinen Adding and changing svn properties.
(edit) @1110   14 years Nicklas Nordborg References #218: Proof-of-concept: run a selected GenePattern? module …
(edit) @1109   14 years Nicklas Nordborg References #222: Utility for transfering file between BASE and a …
(edit) @1108   14 years Nicklas Nordborg Fixes #221: Configure GenePattern? server The settings are now saved …
(edit) @1107   14 years Nicklas Nordborg References #222: Utility for transfering file between BASE and a …
(edit) @1106   14 years Nicklas Nordborg Fixes #224: Add a "Test" button on the GenePattern? 'edit server' page …
(edit) @1105   14 years Nicklas Nordborg Ant 1.7 is needed for zip file extraction with the <mapper> element.
(edit) @1104   14 years Nicklas Nordborg References #224: Add a "Test" button on the GenePattern? 'edit server' …
(edit) @1103   14 years Nicklas Nordborg References #223: Add target in build.xml for downloading required …
(edit) @1102   14 years Nicklas Nordborg Fixes #221: Configure GenePattern? server
(edit) @1101   14 years Nicklas Nordborg Preparing for future release 1.4
(edit) @1100   14 years Nicklas Nordborg Tagging version 1.3
(edit) @1099   14 years Nicklas Nordborg Preparing for release 1.3
(edit) @1098   14 years Nicklas Nordborg Fixes #220: MeV doesn't download files correctly Added the file id …
(edit) @1097   14 years Martin Svensson References #180. The plot-extension is almost done. How the spot data …
(edit) @1096   14 years Nicklas Nordborg Preparing for future release 1.2
(edit) @1095   14 years Nicklas Nordborg Tagging version 1.1
(edit) @1094   14 years Nicklas Nordborg Preparing for release 1.1
(edit) @1093   14 years Martin Svensson References #182 The information is now inserted in the README file, in …
(edit) @1092   14 years Nicklas Nordborg References #217: GCT exporter Make sure assay names are unique in the …
(edit) @1091   14 years Nicklas Nordborg Fixes #217: GCT exporter
(edit) @1090   14 years Nicklas Nordborg Fixes #216: Setup source code repository for GenePattern? integration
(edit) @1089   14 years Nicklas Nordborg References #216: Setup source code repository for GenePattern? …
(edit) @1088   14 years Nicklas Nordborg References #216: Setup source code repository for GenePattern? integration
(edit) @1087   14 years Martin Svensson Fixes #195 net.sf.basedb.normalizers: Normalizers should ask user for …
(edit) @1086   14 years Nicklas Nordborg References #212: Add support for exporting CGH data to MeV Fixed a …
(edit) @1085   14 years Nicklas Nordborg Fixes #215: BGX reporter importer hangs if the [Controls] section has …
(edit) @1084   14 years Martin Svensson References #195 Updates everything except documentation/wiki, cause …
(edit) @1083   14 years Nicklas Nordborg References #212: Add support for exporting CGH data to MeV I have …
(edit) @1082   14 years Nicklas Nordborg References #212: Add support for exporting CGH data to MeV The …
(edit) @1081   14 years Nicklas Nordborg References #214: Move TDMS export to this extension Logged values can …
(edit) @1080   14 years Jari Häkkinen Changes for future release 0.3
(edit) @1079   14 years Jari Häkkinen Fixes #118. qQuantiler will only show up in proper context and …
(edit) @1078   14 years Jari Häkkinen Tagging version 0.2 of PluginUtilities?.
(edit) @1077   14 years Jari Häkkinen Releasing version 0.2 of PluginUtilities?.
(edit) @1076   14 years Jari Häkkinen Adding context checks for number of channels.
(edit) @1075   14 years Jari Häkkinen Cleaner code, removed unused imports.
(edit) @1074   14 years Jari Häkkinen Addresses #118. Added documentation for qQuantiler.
(edit) @1073   14 years Jari Häkkinen Addresses #118. q=max(10,min(100,target_size/10))
(edit) @1072   14 years Jari Häkkinen Fixing cut&paste typo. Thanks Peter.
(edit) @1071   14 years Nicklas Nordborg References #214: Move TDMS export to this extension Removed …
(edit) @1070   14 years Nicklas Nordborg Fixes #194: Default export file names should be more unique
(edit) @1069   14 years Nicklas Nordborg References #214: Move TDMS export to this extension Removed some …
(edit) @1068   14 years Nicklas Nordborg Fixes #214: Move TDMS export to this extension
(edit) @1067   14 years Jari Häkkinen Addresses #118. Forcing negative and 0 intensities to be NaNs? with 0 …
(edit) @1066   14 years Jari Häkkinen Preparing for next milestone.
(edit) @1065   14 years Jari Häkkinen Reverting changes commit by mistake to README.
(edit) @1064   14 years Jari Häkkinen Addresses #118. Calculate target with median instead of mean.
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