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Diff Rev Age Author Log Message
(edit) @1213   12 years Jari Häkkinen Updated install instructions and added upgraded instructions.
(edit) @1212   12 years Jari Häkkinen Adding support to save background expression matrix to file.
(edit) @1211   12 years Jari Häkkinen Addresses #248 and #252. Do not use 'externalId' field if save to file …
(edit) @1210   12 years Jari Häkkinen Addresses #248 and #252. Median fixed.
(edit) @1209   12 years Peter Johansson fix so cblas detection works on osx
(edit) @1208   12 years Jari Häkkinen Moved close call to proper location.
(edit) @1207   12 years Jari Häkkinen Addresses #248 and #252. Documentet parameter for saving background …
(edit) @1206   12 years Jari Häkkinen Addresses #248 and #252. File contains relevant information now. Mean …
(edit) @1205   12 years Jari Häkkinen Addresses #248 and #252. Optionally creating and attaching background …
(edit) @1204   12 years Jari Häkkinen Fixed typo.
(edit) @1203   12 years Jari Häkkinen Improved documentation for Background correction plug-in
(edit) @1202   12 years Jari Häkkinen Preparing for future release 1.1
(edit) @1201   12 years Jari Häkkinen Tagging version 1.0
(edit) @1200   12 years Jari Häkkinen Preparing release of version 1.0
(edit) @1199   12 years Jari Häkkinen net.sf.basdb.agilent first commit
(edit) @1198   12 years Jari Häkkinen Setting svndigest:ignore property
(edit) @1197   12 years Jari Häkkinen Minor change.
(edit) @1196   12 years Jari Häkkinen Fixed internal refs.
(edit) @1195   12 years Jari Häkkinen Setting up repository for net.sf.basedb.agilent package
(edit) @1194   12 years Jari Häkkinen Typo.
(edit) @1193   12 years Nicklas Nordborg Preparing for future release MeV launcher 1.7
(edit) @1192   12 years Nicklas Nordborg Tagging MeV launcher 1.6
(edit) @1191   12 years Nicklas Nordborg Preparing release of MeV launcher 1.6
(edit) @1190   12 years Nicklas Nordborg Fixes #258: Update to MeV 4.5.1
(edit) @1189   12 years Nicklas Nordborg References #257: Fix issues with the BGX reporter importer due to …
(edit) @1188   13 years Jari Häkkinen Committing patch provided by Gildas Le Corguillé
(edit) @1187   13 years Nicklas Nordborg Fixes #257: Fix issues with the BGX reporter importer due to changes …
(edit) @1186   13 years Jari Häkkinen Bumping BASE requirement to 2.15
(edit) @1185   13 years Jari Häkkinen Improved documentation.
(edit) @1184   13 years Nicklas Nordborg Preparing for future release of MeV Launcher 1.6
(edit) @1183   13 years Nicklas Nordborg Tagging MeV Launcher 1.5
(edit) @1182   13 years Nicklas Nordborg Preparing release of MeV Launcher 1.5
(edit) @1181   13 years Nicklas Nordborg References #241: Add MeV Analysis file as a file type for bioassay …
(edit) @1180   13 years Nicklas Nordborg References #241: Add MeV Analysis file as a file type for bioassay …
(edit) @1179   13 years Jari Häkkinen Fixes #251.
(edit) @1178   13 years Jari Häkkinen Changed 'Controls summary' to 'Control summary'.
(edit) @1177   13 years Jari Häkkinen Improved qQuantiler docs.
(edit) @1176   13 years Nicklas Nordborg Fixes #242: Implement "Save to BASE" function in the MeV gui Fixed …
(edit) @1175   13 years Jari Häkkinen Updated release procedure. Fixed BASE version requirement.
(edit) @1174   13 years Jari Häkkinen Preparing for future 1.5 release.
(edit) @1173   13 years Jari Häkkinen Tagging Illumina package 1.4 a second time
(edit) @1172   13 years Jari Häkkinen Preparing release 1.4 once more
(edit) @1171   13 years Jari Häkkinen Missed to change on version number in source code.
(edit) @1170   13 years Jari Häkkinen Tagging Illumina package 1.4
(edit) @1169   13 years Jari Häkkinen Preparing release 1.4
(edit) @1168   13 years Jari Häkkinen Fixes #204. Also improved docs.
(edit) @1167   13 years Jari Häkkinen Fixes #113. The code change in changeset:1114 is valid, fixed docs.
(edit) @1166   13 years Jari Häkkinen Fixes #235 and spelling.
(edit) @1165   13 years Nicklas Nordborg References #242: Implement "Save to BASE" function in the MeV gui The …
(edit) @1164   13 years Jari Häkkinen Fixes #247. A work around for the erroneous export from exportPlainMatrix.
(edit) @1163   13 years Nicklas Nordborg References #242: Implement "Save to BASE" function in the MeV gui The …
(edit) @1162   13 years Nicklas Nordborg Fixes #246: Add MeV Analysis file to list of MIME types
(edit) @1161   13 years Nicklas Nordborg Fixes #241: Add MeV Analysis file as a file type for bioassay sets …
(edit) @1160   13 years Nicklas Nordborg References #241: Add MeV Analysis file as a file type for bioassay …
(edit) @1159   13 years Nicklas Nordborg References #241: Add MeV Analysis file as a file type for bioassay …
(edit) @1158   13 years Nicklas Nordborg Checking in the .classpath file for Eclipse since it is so boring to …
(edit) @1157   13 years Nicklas Nordborg References #241: Add MeV Analysis file as a file type for bioassay …
(edit) @1156   13 years Nicklas Nordborg References #241: Add MeV Analysis file as a file type for bioassay …
(edit) @1155   13 years Nicklas Nordborg Changes for future release 1.5
(edit) @1154   13 years Nicklas Nordborg Tagging MeV launcher 1.4
(edit) @1153   13 years Nicklas Nordborg Preparing release of "MeV launcher 1.4"
(edit) @1152   13 years Nicklas Nordborg Preparing for future release 1.3
(edit) @1151   13 years Nicklas Nordborg Tagging release 1.2
(edit) @1150   13 years Nicklas Nordborg Preparing release of "Extension examples 1.2"
(edit) @1149   13 years Nicklas Nordborg Fixes #240: Bead summary importer should have an option to fail if the …
(edit) @1148   13 years Nicklas Nordborg Fixes #238: Supply plug-in configuration files for MicroRNA files
(edit) @1147   13 years Nicklas Nordborg Fixes #237: Add support for MicroRNA BGX files to reporter importer
(edit) @1146   13 years Nicklas Nordborg Fixes #239: BGX reporter/feature importer auto-detection matches any …
(edit) @1145   13 years Nicklas Nordborg References #226: Update to MeV 4.4 MeV has been updated. Remains to …
(edit) @1144   13 years Martin Svensson References #228 Updated the method that calculates bioassayset's …
(edit) @1143   13 years Martin Svensson References #228 Added parameter to define which average method to use …
(edit) @1142   13 years Martin Svensson Fixes #180 Overview plot extensions for Illumina expression
(edit) @1141   13 years Martin Svensson References #180 The work with the plotting extension is now finished …
(edit) @1140   13 years Nicklas Nordborg Making README a trac wiki page
(edit) @1139   13 years Nicklas Nordborg References #223: Add target in build.xml for downloading required …
(edit) @1138   13 years Nicklas Nordborg References #223: Add target in build.xml for downloading required …
(edit) @1137   13 years Martin Svensson References #180. Some necassary libraries for the JFreePlots.
(edit) @1136   13 years Martin Svensson References #180. Some necassary libraries for the JFreePlots.
(edit) @1135   13 years Martin Svensson References #180 The overview plots are almost finished. Some smaller …
(edit) @1134   13 years Nicklas Nordborg References #234: Proof-of-concept: run a selected GenePattern? …
(edit) @1133   13 years Martin Svensson References #180 Created classes for the control summary plots.
(edit) @1132   13 years Nicklas Nordborg References #234: Proof-of-concept: run a selected GenePattern? …
(edit) @1131   13 years Nicklas Nordborg References #218: Proof-of-concept: run a selected GenePattern? module …
(edit) @1130   13 years Nicklas Nordborg References #229: Implement API for additional GenePattern? web services …
(edit) @1129   13 years Nicklas Nordborg References #222: Utility for transfering file between BASE and a …
(edit) @1128   13 years Nicklas Nordborg References #222, #218, #229. Several changes just to make things work.
(edit) @1127   13 years Nicklas Nordborg References #222: Utility for transfering file between BASE and a …
(edit) @1126   13 years Nicklas Nordborg References #221: Configure GenePattern? server Added field for URL to …
(edit) @1125   13 years Nicklas Nordborg Fixes #233: Add example that uses the alternate approach for invoking …
(edit) @1124   13 years Jari Häkkinen Fixes #231.
(edit) @1123   13 years Jari Häkkinen Fixed CamelCase escape
(edit) @1122   13 years Jari Häkkinen Fixes #227.
(edit) @1121   13 years Jari Häkkinen Fixes #230. Lower limit is now 1.
(edit) @1120   13 years Jari Häkkinen Fixes #232.
(edit) @1119   13 years Nicklas Nordborg References #218: Proof-of-concept: run a selected GenePattern? module …
(edit) @1118   13 years Nicklas Nordborg References #229: Implement API for additional GenePattern? web services …
(edit) @1117   13 years Nicklas Nordborg References #221: Configure GenePattern? server Changed the AJAX calls …
(edit) @1116   13 years Nicklas Nordborg References #222 and #229. File transfer gateway now uses the new wrappers.
(edit) @1115   13 years Nicklas Nordborg References #229: Implement API for additional GenePattern? web services …
(edit) @1114   13 years Jari Häkkinen Addresses #113. The Pvalue calculation is in place. Need to figure …
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