|
|
|
@605
|
15 years |
Nicklas Nordborg |
Moving se.lu.thep.wenni project to new location
|
|
|
|
@604
|
15 years |
Nicklas Nordborg |
Moving se.lu.thep.affymetrix project to new location
|
|
|
|
@603
|
15 years |
Nicklas Nordborg |
Moving se.lu.onk project to new location
|
|
|
|
@602
|
15 years |
Nicklas Nordborg |
Removed trunk folders that prevents moving the projects
|
|
|
|
@601
|
15 years |
Nicklas Nordborg |
Moving Illumina project to new location (second try)
|
|
|
|
@600
|
15 years |
Nicklas Nordborg |
Copied to incorrect directory
|
|
|
|
@599
|
15 years |
Nicklas Nordborg |
Moving Illumina project to new location
|
|
|
|
@598
|
15 years |
Nicklas Nordborg |
Preparing new directory structure
|
|
|
|
@597
|
15 years |
Jari Häkkinen |
Improved memory usage of NNIFileConverter.
|
|
|
|
@596
|
15 years |
Jari Häkkinen |
Removing obsolete member function declarations.
|
|
|
|
@595
|
15 years |
Jari Häkkinen |
test should be the last directory visited for 'make'
|
|
|
|
@594
|
15 years |
Jari Häkkinen |
Improved memory usage of BaseFileConverter?. Previous implementation …
|
|
|
|
@593
|
15 years |
Jari Häkkinen |
Clarified that absolute path needed fof configure.
|
|
|
|
@592
|
15 years |
Martin Svensson |
References #101. Started on the plugin. A commit for the weekend.
|
|
|
|
@591
|
15 years |
Martin Svensson |
References #93 Correct some comments and removed debug-code
|
|
|
|
@590
|
15 years |
Martin Svensson |
References #93 You can now validate and extract meta-data from …
|
|
|
|
@589
|
15 years |
Martin Svensson |
References #100 Installation is now including SNP platform-variant and …
|
|
|
|
@588
|
15 years |
Nicklas Nordborg |
Fixes #91: Import Illumina Bead Summary(IBS) files as raw data
|
|
|
|
@587
|
15 years |
Martin Svensson |
References #89 Correct the name of the plug-in
|
|
|
|
@586
|
15 years |
Nicklas Nordborg |
References #94: Import reporter annotations from bgx files
Added …
|
|
|
|
@585
|
15 years |
Nicklas Nordborg |
References #89: Installation program and documentation
Updated …
|
|
|
|
@584
|
15 years |
Nicklas Nordborg |
Fixes #98: Implement validator and metadata extractor plug-in for BGX files
|
|
|
|
@583
|
15 years |
Nicklas Nordborg |
References #89: Installation program and documentation
Minor changes …
|
|
|
|
@582
|
15 years |
Nicklas Nordborg |
Removed unused imports
|
|
|
|
@581
|
15 years |
Nicklas Nordborg |
References #90: Create array design from a bgx-file
Fixed missing …
|
|
|
|
@580
|
15 years |
Nicklas Nordborg |
References #89: Installation program and documentation
Added 'Getting …
|
|
|
|
@579
|
15 years |
Martin Svensson |
Fixes #98 Implement validator and metadata extractor plug-in for BGX files
|
|
|
|
@578
|
15 years |
Martin Svensson |
Fixes #90 Create array design from a bgx-file.
|
|
|
|
@577
|
15 years |
Martin Svensson |
References #89 Installation plug-in is now able to create Illumina …
|
|
|
|
@576
|
15 years |
Martin Svensson |
References #89 Changed to wiki format and configured some svn properties
|
|
|
|
@575
|
15 years |
Martin Svensson |
Reference #94 Added more extended properties for Illumina reporters …
|
|
|
|
@574
|
15 years |
Jari Häkkinen |
Added information on how to resolve missing probe set situations.
|
|
|
|
@573
|
15 years |
Martin Svensson |
References #89 Added extended properties to be used with Illumina in BASE.
|
|
|
|
@572
|
15 years |
Martin Svensson |
References #89 Change names, ids and variables according to …
|
|
|
|
@571
|
15 years |
Martin Svensson |
References #89 Updated svn-properties for README file
|
|
|
|
@570
|
15 years |
Martin Svensson |
References #89 Inserted the readme-text in wiki format.
|
|
|
|
@569
|
15 years |
Martin Svensson |
References #98 The validator and meta data reader is done. The …
|
|
|
|
@568
|
15 years |
Nicklas Nordborg |
References #91: Import Illumina scandata files as raw data
Call …
|
|
|
|
@567
|
15 years |
Martin Svensson |
References #98 A start of a BGX validator/metadatareader.
|
|
|
|
@566
|
15 years |
Nicklas Nordborg |
References #89: Installation program and documentation
Added rest of …
|
|
|
|
@565
|
15 years |
Martin Svensson |
References #90 Added a default plugin configuration to come along with …
|
|
|
|
@564
|
15 years |
Nicklas Nordborg |
References #91: Import Illumina scandata files as raw data
Error …
|
|
|
|
@563
|
15 years |
Martin Svensson |
References #90 Refine comments and removed some blank lines.
|
|
|
|
@562
|
15 years |
Nicklas Nordborg |
References #91: Import Illumina scandata files as raw data
The …
|
|
|
|
@561
|
15 years |
Martin Svensson |
References #90 The plug-in can now be used to import features to an …
|
|
|
|
@560
|
15 years |
Nicklas Nordborg |
References #91: Import Illumina scandata files as raw data
A skeleton …
|
|
|
|
@559
|
15 years |
Nicklas Nordborg |
References #94: Import reporter annotations from bgx files
The …
|
|
|
|
@558
|
15 years |
mbayer |
have fixed several bugs after testing whole imports, notably a problem …
|
|
|
|
@557
|
15 years |
Nicklas Nordborg |
References #89: Installation program and documentation
Documented the …
|
|
|
|
@556
|
15 years |
Nicklas Nordborg |
References #94: Import reporter annotations from bgx files
First …
|
|
|
|
@555
|
15 years |
Martin Svensson |
References #89 Added more property checks when an item already exists …
|
|
|
|
@554
|
15 years |
Martin Svensson |
References #89 Illumina items are now created by the installation …
|
|
|
|
@553
|
15 years |
Nicklas Nordborg |
References #89: Installation program and documentation
Added INSTALL file
|
|
|
|
@552
|
15 years |
mbayer |
have added input validation (mandatory fields check)
added back …
|
|
|
|
@551
|
15 years |
Martin Svensson |
References #89 Start to insert illumina items with the installation plug-in
|
|
|
|
@550
|
15 years |
mbayer |
have restructured the code completely that writes the hybs section
|
|
|
|
@549
|
15 years |
Nicklas Nordborg |
References #89: Installation program and documentation
Updated …
|
|
|
|
@548
|
15 years |
mbayer |
new page added to gather additional info needed for autogeneration of …
|
|
|
|
@547
|
15 years |
mbayer |
number of issues fixed in UI
|
|
|
|
@546
|
15 years |
Nicklas Nordborg |
Initial project structure is now in place.
|
|
|
|
@545
|
15 years |
mbayer |
fixed bug in the submission of experiments that provide their own …
|
|
|
|
@544
|
15 years |
mbayer |
submission with existing tab2mage file implemented
|
|
|
|
@543
|
15 years |
mbayer |
submit mechanism has been changed to interactive -- submit.jsp now …
|
|
|
|
@542
|
15 years |
Nicklas Nordborg |
Adding root folder for example code (plug-ins and webservices client)
|
|
|
|
@541
|
15 years |
Nicklas Nordborg |
Adding root folder for the Illumina plug-ins project
|
|
|
|
@540
|
15 years |
mbayer |
changed code so that users can either run the wizard or import data …
|
|
|
|
@539
|
15 years |
mbayer |
forgot to add new files -- now added
|
|
|
|
@538
|
15 years |
gregory |
|
|
|
|
@537
|
15 years |
gregory |
|
|
|
|
@536
|
15 years |
gregory |
|
|
|
|
@535
|
15 years |
gregory |
|
|
|
|
@534
|
15 years |
gregory |
|
|
|
|
@533
|
15 years |
gregory |
|
|
|
|
@532
|
15 years |
mbayer |
-major expansion of system to allow for different use cases
- now …
|
|
|
|
@531
|
15 years |
mbayer |
had to add in ability for user to configure subject names and tissues …
|
|
|
|
@530
|
15 years |
mbayer |
file mappings now filter through into tab2mage file but still have to …
|
|
|
|
@529
|
15 years |
mbayer |
have added code to collect the values of the files selected from the …
|
|
|
|
@528
|
15 years |
mbayer |
file mappings now fully implemented on UI side -- still need to pick …
|
|
|
|
@527
|
15 years |
mbayer |
have added a cartesian product algorithm that compute
|
|
|
|
@526
|
15 years |
mbayer |
added a fourth JSP page which will be used to let the user configure …
|
|
|
|
@525
|
15 years |
mbayer |
- basic Affy support implemented
- next steps required now: mappings …
|
|
|
|
@524
|
15 years |
mbayer |
have made more changes to the UI to satisfy IE requirements
also fixed …
|
|
|
|
@523
|
15 years |
mbayer |
some more tweaks to the interface, mostly for making it work with IE
|
|
|
|
@522
|
15 years |
mbayer |
made a number of tweaks to the interface
|
|
|
|
@521
|
15 years |
mbayer |
some minor bug fixes
|
|
|
|
@520
|
15 years |
mbayer |
added two missing files
|
|
|
|
@519
|
15 years |
mbayer |
- got first import with test data to work (genepix) from beginning to …
|
|
|
|
@518
|
15 years |
mbayer |
integration of generated tab2mage file with the rest of the code is …
|
|
|
|
@517
|
15 years |
mbayer |
writer now also writes hybs section out but still needs to be …
|
|
|
|
@516
|
15 years |
mbayer |
first two sections of tab2mage file now get generated ok
|
|
|
|
@515
|
15 years |
mbayer |
problem with file writing fixed - file is now actually written to …
|
|
|
|
@514
|
15 years |
mbayer |
added missing class
|
|
|
|
@513
|
15 years |
mbayer |
have implemented a skeleton writer class which writes a dummy tab2mage file
|
|
|
|
@512
|
15 years |
mbayer |
- have tied the interface to the importer plugin class now -- all …
|
|
|
|
@511
|
15 years |
mbayer |
- have tidied up the interface to the point where it is usable as it …
|
|
|
|
@510
|
15 years |
mbayer |
added html files for easier design of the interface -- these won't …
|
|
|
|
@509
|
15 years |
dominic |
updated changelog file
|
|
|
|
@508
|
15 years |
dominic |
updated changelog file
|
|
|
|
@507
|
15 years |
dominic |
updated changelog file
|
|
|
|
@506
|
15 years |
dominic |
updated changelog file
|
|
|
|
