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Diff Rev Age Author Log Message
(edit) @687   15 years Jari Häkkinen Recovering svndigest config file.
(edit) @686   15 years Jari Häkkinen Addresses #110.
(edit) @685   15 years Jari Häkkinen Improved text.
(edit) @684   15 years Jari Häkkinen Fixes #104. Docs already fixed, added build check.
(edit) @683   15 years Nicklas Nordborg References #103. Updated README with latest information.
(edit) @682   15 years Nicklas Nordborg References #103. Moved all examples into a submenu.
(edit) @681   15 years Jari Häkkinen Addresses #110. Single sample Whole Genome BeadChips? detection P-value …
(edit) @680   15 years Jari Häkkinen Bumped version number to pre1.1
(edit) @679   15 years Jari Häkkinen Moving flush call to a more appropriate place.
(edit) @678   15 years Jari Häkkinen No configurations for BeadSummaryImporter?
(edit) @677   15 years mbayer tidied up -- minor changes
(edit) @676   15 years mbayer removed deprecated code for raw bioassay creation and replaced with …
(edit) @675   15 years mbayer default values for update existing parameter changed
(edit) @674   15 years mbayer changed the way the zip file input stream is obtained back to how it was
(edit) @673   15 years mbayer updated
(edit) @672   15 years mbayer removed default values for most inputs
(edit) @671   15 years mbayer added code for copying over the two additional required jar files …
(edit) @670   15 years mbayer - build script tidied up - new BASE libs added and existing ones …
(edit) @669   15 years Jari Häkkinen Adding background correction plugin
(edit) @668   15 years Nicklas Nordborg Set MIME type on README
(edit) @667   15 years Nicklas Nordborg Changes related to ​http://base.thep.lu.se/changeset/4237
(edit) @666   15 years Nicklas Nordborg References #107: Move the MEV specific code from BASE Initial …
(edit) @665   15 years Jari Häkkinen Added support for using configurable columns. Useful if BASE extra …
(edit) @664   15 years Jari Häkkinen Fixing problem with reading sections.
(edit) @663   15 years Jari Häkkinen Fixing compiler errors.
(edit) @662   15 years Jari Häkkinen Jar file name and class name wrong.
(edit) @661   15 years Nicklas Nordborg References #103: Create example extensions Added X-JSP example
(edit) @660   15 years Jari Häkkinen Alphabetized list and fixed indendation.
(edit) @659   15 years mbayer fixed two minor errors in build script
(edit) @658   15 years Nicklas Nordborg References #103: Create example extensions Adding another image
(edit) @657   15 years Nicklas Nordborg Add svn.ignore for generated files.
(edit) @656   15 years Nicklas Nordborg References #103: Create example extensions Adding a servlet example
(edit) @655   15 years mbayer deleted this jar file -- it does not get updated! need to use …
(edit) @654   15 years mbayer have made a number of changes relating to Affy support and fixed …
(edit) @653   15 years Nicklas Nordborg
(edit) @652   15 years Nicklas Nordborg Preparing release 2.6
(edit) @651   15 years Nicklas Nordborg References #106: Move the example web services code from the BASE …
(edit) @650   15 years Nicklas Nordborg Preparing for future release 2.X
(edit) @649   15 years Nicklas Nordborg Tagging release 2.6
(edit) @648   15 years Nicklas Nordborg Preparing relase 2.6
(edit) @647   15 years Nicklas Nordborg References #105: Complete the move of the example code from BASE. …
(edit) @646   15 years Jari Häkkinen Fixing copyright lines.
(edit) @645   15 years Jari Häkkinen Updated the BASE core jar requirements.
(edit) @644   15 years mbayer have added a progress bar to the userchoice3.jsp page to warn the user …
(edit) @643   15 years mbayer code base simplified -- no longer supporting autogenerate option and …
(edit) @642   15 years Nicklas Nordborg Updated examples so they work with the latest changes in the BASE core.
(edit) @641   15 years Nicklas Nordborg References #103. Added "About" information to xml file and a minor fix …
(edit) @640   16 years mbayer test file commit -- having trouble committing into the new repo
(edit) @639   16 years mbayer simplified the workflow and inputs
(edit) @638   16 years Nicklas Nordborg References #103: Create example extensions Made build process simpler.
(edit) @637   16 years Nicklas Nordborg References #103: Create example extensions ant package now also …
(edit) @636   16 years Nicklas Nordborg References #103: Create example extensions First checkin of example …
(edit) @635   16 years Nicklas Nordborg Added directory structure for extension examples
(edit) @634   16 years Nicklas Nordborg Added release procedure instructions.
(edit) @633   16 years Nicklas Nordborg Changes for future release 1.1
(edit) @632   16 years Nicklas Nordborg Tagging release 1.0
(edit) @631   16 years Nicklas Nordborg References #91: Import Illumina Bead Summary(IBS) files as raw data …
(edit) @630   16 years Nicklas Nordborg References #94: Import reporter annotations from bgx files Added …
(edit) @629   16 years Nicklas Nordborg References #89: Installation program and documentation Preparing for …
(edit) @628   16 years Nicklas Nordborg References #89: Installation program and documentation Made the SNP …
(edit) @627   16 years Nicklas Nordborg References #89: Installation program and documentation Added readme …
(edit) @626   16 years Nicklas Nordborg References #89, #100: Added formulas for better SNP gui. Gtype = …
(edit) @625   16 years Nicklas Nordborg References #102: Intensity calculator for Illumina SNP data Added …
(edit) @624   16 years Nicklas Nordborg References #102: Intensity calculator for Illumina SNP data The main …
(edit) @623   16 years Martin Svensson Fixes #100. Add Illumina SNP platform to the installation program
(edit) @622   16 years Martin Svensson References #101comment:9 - fixes the listed items in the comment.
(edit) @621   16 years Nicklas Nordborg Removed unused imports
(edit) @620   16 years Martin Svensson Fixes #93 Added some more javadoc and improved the code format in a …
(edit) @619   16 years Martin Svensson Fixes #101. The plug-in tested both from raw bioassay-listview and …
(edit) @618   16 years Martin Svensson References #101. The import is now done. Code needs to be cleaned up …
(edit) @617   16 years Martin Svensson References #101. Creating RawBioAssays? and split up files. The data …
(edit) @616   16 years Nicklas Nordborg Deleting old locations (again)
(edit) @615   16 years Nicklas Nordborg Deleting old branches (fourth try)
(edit) @614   16 years (none)
(edit) @613   16 years (none) Deleting old branches (second try)
(edit) @612   16 years (none) Deleting old locations
(edit) @611   16 years Nicklas Nordborg Moving tab2mageimporter branch to the new location
(edit) @610   16 years Nicklas Nordborg Moving affymetrix 0.7 tag to new location
(edit) @609   16 years Nicklas Nordborg Moving affymetrix 0.6 tag to new location
(edit) @608   16 years Nicklas Nordborg Moving perl/R webservices example project to new location
(edit) @607   16 years Nicklas Nordborg Moving batchimporter project to new location
(edit) @606   16 years Nicklas Nordborg Moving tab2mage project to new location
(edit) @605   16 years Nicklas Nordborg Moving se.lu.thep.wenni project to new location
(edit) @604   16 years Nicklas Nordborg Moving se.lu.thep.affymetrix project to new location
(edit) @603   16 years Nicklas Nordborg Moving se.lu.onk project to new location
(edit) @602   16 years Nicklas Nordborg Removed trunk folders that prevents moving the projects
(edit) @601   16 years Nicklas Nordborg Moving Illumina project to new location (second try)
(edit) @600   16 years Nicklas Nordborg Copied to incorrect directory
(edit) @599   16 years Nicklas Nordborg Moving Illumina project to new location
(edit) @598   16 years Nicklas Nordborg Preparing new directory structure
(edit) @597   16 years Jari Häkkinen Improved memory usage of NNIFileConverter.
(edit) @596   16 years Jari Häkkinen Removing obsolete member function declarations.
(edit) @595   16 years Jari Häkkinen test should be the last directory visited for 'make'
(edit) @594   16 years Jari Häkkinen Improved memory usage of BaseFileConverter?. Previous implementation …
(edit) @593   16 years Jari Häkkinen Clarified that absolute path needed fof configure.
(edit) @592   16 years Martin Svensson References #101. Started on the plugin. A commit for the weekend.
(edit) @591   16 years Martin Svensson References #93 Correct some comments and removed debug-code
(edit) @590   16 years Martin Svensson References #93 You can now validate and extract meta-data from …
(edit) @589   16 years Martin Svensson References #100 Installation is now including SNP platform-variant and …
(edit) @588   16 years Nicklas Nordborg Fixes #91: Import Illumina Bead Summary(IBS) files as raw data
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