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Diff Rev Age Author Log Message
(edit) @723   14 years Martin Svensson Added a folder for the normalization package.
(edit) @722   14 years Nicklas Nordborg Fixes #116: Make the MEV launcher extension aware of bioassaysets that …
(edit) @721   14 years Jari Häkkinen Shuffling directory structure to the recommended trunk and tags.
(edit) @720   14 years Jari Häkkinen Importing CGH Data Dumper
(edit) @719   14 years Nicklas Nordborg References #114: Implement FTP Server If server fails to start, makes …
(edit) @718   14 years Jari Häkkinen Also share manifest file.
(edit) @717   14 years Nicklas Nordborg References #114: Implement FTP Server Stopping and starting now …
(edit) @716   14 years Nicklas Nordborg References #114: Implement FTP Server Cleaned up code and …
(edit) @715   14 years Nicklas Nordborg References #114: Implement FTP Server Settings some properties for trac.
(edit) @714   14 years Nicklas Nordborg References #114: Implement FTP Server Initial checkin.
(edit) @713   14 years Jari Häkkinen Made Smooth to look for parameter section as it is called in the base …
(edit) @712   14 years Jari Häkkinen Smooth requires additional jars to be included in the package. Removed …
(edit) @711   14 years Jari Häkkinen Fixes BASEfile serial spot section issue: The reader did not get …
(edit) @710   14 years Nicklas Nordborg Adding ftp server tags folder
(edit) @709   14 years Nicklas Nordborg Adding FTP Server trunk folder
(edit) @708   14 years Nicklas Nordborg Adding FTP Server root folder
(edit) @707   14 years Jari Häkkinen Getting Smooth to compile.
(edit) @706   14 years Jari Häkkinen Adding notes on how to create a package.
(edit) @705   14 years Jari Häkkinen Fixing svn property.
(edit) @704   14 years Jari Häkkinen Fixing svn property.
(edit) @703   14 years Jari Häkkinen Preparing for future 1.2 release
(edit) @702   14 years Jari Häkkinen Tagging release 1.1
(edit) @701   14 years Jari Häkkinen Preparing release of Illumina plug-in package 1.1
(edit) @700   14 years Jari Häkkinen Improved description.
(edit) @699   14 years Jari Häkkinen Added two new plugins to the list of plugins. Alphabetized list.
(edit) @698   14 years Jari Häkkinen Fixes #110.
(edit) @697   14 years Nicklas Nordborg Preparing for future release 1.1
(edit) @696   14 years Nicklas Nordborg Tagging release 1.0
(edit) @695   14 years Nicklas Nordborg Preparing release 1.0
(edit) @694   14 years Nicklas Nordborg Preparing for future release 1.1
(edit) @693   14 years Nicklas Nordborg Tagging release 1.0
(edit) @692   14 years Nicklas Nordborg Preparing release 1.0
(edit) @691   14 years Nicklas Nordborg Fixes #103: Create example extensions
(edit) @690   14 years Nicklas Nordborg Fixes #107: Move the MEV specific code from BASE
(edit) @689   14 years Jari Häkkinen Addresses #110. Added MAD based outlier removal of negative control …
(edit) @688   14 years Jari Häkkinen Typo
(edit) @687   14 years Jari Häkkinen Recovering svndigest config file.
(edit) @686   14 years Jari Häkkinen Addresses #110.
(edit) @685   14 years Jari Häkkinen Improved text.
(edit) @684   14 years Jari Häkkinen Fixes #104. Docs already fixed, added build check.
(edit) @683   14 years Nicklas Nordborg References #103. Updated README with latest information.
(edit) @682   14 years Nicklas Nordborg References #103. Moved all examples into a submenu.
(edit) @681   14 years Jari Häkkinen Addresses #110. Single sample Whole Genome BeadChips? detection P-value …
(edit) @680   14 years Jari Häkkinen Bumped version number to pre1.1
(edit) @679   14 years Jari Häkkinen Moving flush call to a more appropriate place.
(edit) @678   14 years Jari Häkkinen No configurations for BeadSummaryImporter?
(edit) @677   14 years mbayer tidied up -- minor changes
(edit) @676   14 years mbayer removed deprecated code for raw bioassay creation and replaced with …
(edit) @675   14 years mbayer default values for update existing parameter changed
(edit) @674   14 years mbayer changed the way the zip file input stream is obtained back to how it was
(edit) @673   14 years mbayer updated
(edit) @672   14 years mbayer removed default values for most inputs
(edit) @671   14 years mbayer added code for copying over the two additional required jar files …
(edit) @670   14 years mbayer - build script tidied up - new BASE libs added and existing ones …
(edit) @669   14 years Jari Häkkinen Adding background correction plugin
(edit) @668   14 years Nicklas Nordborg Set MIME type on README
(edit) @667   14 years Nicklas Nordborg Changes related to http://base.thep.lu.se/changeset/4237
(edit) @666   14 years Nicklas Nordborg References #107: Move the MEV specific code from BASE Initial …
(edit) @665   14 years Jari Häkkinen Added support for using configurable columns. Useful if BASE extra …
(edit) @664   14 years Jari Häkkinen Fixing problem with reading sections.
(edit) @663   14 years Jari Häkkinen Fixing compiler errors.
(edit) @662   14 years Jari Häkkinen Jar file name and class name wrong.
(edit) @661   14 years Nicklas Nordborg References #103: Create example extensions Added X-JSP example
(edit) @660   14 years Jari Häkkinen Alphabetized list and fixed indendation.
(edit) @659   14 years mbayer fixed two minor errors in build script
(edit) @658   14 years Nicklas Nordborg References #103: Create example extensions Adding another image
(edit) @657   14 years Nicklas Nordborg Add svn.ignore for generated files.
(edit) @656   14 years Nicklas Nordborg References #103: Create example extensions Adding a servlet example
(edit) @655   14 years mbayer deleted this jar file -- it does not get updated! need to use …
(edit) @654   14 years mbayer have made a number of changes relating to Affy support and fixed …
(edit) @653   14 years Nicklas Nordborg
(edit) @652   14 years Nicklas Nordborg Preparing release 2.6
(edit) @651   14 years Nicklas Nordborg References #106: Move the example web services code from the BASE …
(edit) @650   14 years Nicklas Nordborg Preparing for future release 2.X
(edit) @649   14 years Nicklas Nordborg Tagging release 2.6
(edit) @648   14 years Nicklas Nordborg Preparing relase 2.6
(edit) @647   14 years Nicklas Nordborg References #105: Complete the move of the example code from BASE. …
(edit) @646   14 years Jari Häkkinen Fixing copyright lines.
(edit) @645   14 years Jari Häkkinen Updated the BASE core jar requirements.
(edit) @644   14 years mbayer have added a progress bar to the userchoice3.jsp page to warn the user …
(edit) @643   14 years mbayer code base simplified -- no longer supporting autogenerate option and …
(edit) @642   14 years Nicklas Nordborg Updated examples so they work with the latest changes in the BASE core.
(edit) @641   14 years Nicklas Nordborg References #103. Added "About" information to xml file and a minor fix …
(edit) @640   14 years mbayer test file commit -- having trouble committing into the new repo
(edit) @639   14 years mbayer simplified the workflow and inputs
(edit) @638   14 years Nicklas Nordborg References #103: Create example extensions Made build process simpler.
(edit) @637   14 years Nicklas Nordborg References #103: Create example extensions ant package now also …
(edit) @636   14 years Nicklas Nordborg References #103: Create example extensions First checkin of example …
(edit) @635   14 years Nicklas Nordborg Added directory structure for extension examples
(edit) @634   14 years Nicklas Nordborg Added release procedure instructions.
(edit) @633   14 years Nicklas Nordborg Changes for future release 1.1
(edit) @632   14 years Nicklas Nordborg Tagging release 1.0
(edit) @631   14 years Nicklas Nordborg References #91: Import Illumina Bead Summary(IBS) files as raw data …
(edit) @630   14 years Nicklas Nordborg References #94: Import reporter annotations from bgx files Added …
(edit) @629   14 years Nicklas Nordborg References #89: Installation program and documentation Preparing for …
(edit) @628   14 years Nicklas Nordborg References #89: Installation program and documentation Made the SNP …
(edit) @627   14 years Nicklas Nordborg References #89: Installation program and documentation Added readme …
(edit) @626   14 years Nicklas Nordborg References #89, #100: Added formulas for better SNP gui. Gtype = …
(edit) @625   14 years Nicklas Nordborg References #102: Intensity calculator for Illumina SNP data Added …
(edit) @624   14 years Nicklas Nordborg References #102: Intensity calculator for Illumina SNP data The main …
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