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Diff Rev Age Author Log Message
(edit) @829   15 years Jari Häkkinen Setting svndigest:ignore on copies of trunks to avoid multiple counting.
(edit) @828   15 years Jari Häkkinen Fixes #54
(edit) @827   15 years Jari Häkkinen Added check for SED and some more changelog entries.
(edit) @826   15 years Jari Häkkinen Fixes #148.
(edit) @825   15 years Jari Häkkinen Fixes #146.
(edit) @824   15 years Jari Häkkinen Fixes #145.
(edit) @823   15 years Jari Häkkinen Addresses #53 and fixes #60.
(edit) @822   15 years Jari Häkkinen Updated change information and default installation paths
(edit) @821   15 years Jari Häkkinen Build of stand-alone and base1 modes work. base2 still to be finalized.
(edit) @820   15 years Jari Häkkinen Added note saying that repository checkout requires ./bootstrap.
(edit) @819   15 years Jari Häkkinen Changed u_int to unsigned int to make code pass compilation on my Mac …
(edit) @818   15 years Jari Häkkinen First commit of the AbstractRunBinaryPlugin? class. Still very …
(edit) @817   15 years Jari Häkkinen Fixing typo.
(edit) @816   15 years Martin Svensson References #143 Removed unnecessary comments.
(edit) @815   15 years Martin Svensson Fixes #143 Illumina plug-in package installer requests wrong permissions
(edit) @814   15 years Nicklas Nordborg References #142. Removed problematic character. For historical reasons …
(edit) @813   15 years Martin Svensson Fixes #142 Illumina installer plugin cannot be installed in some cases
(edit) @812   15 years Jari Häkkinen Creating a new package.
(edit) @811   15 years Martin Svensson Fixes #141 Rank invariant should not support configurations. The …
(edit) @810   15 years Nicklas Nordborg Fixes #138: Importing data for multiple raw bioassays in one step
(edit) @809   15 years Nicklas Nordborg Updated release doc so we don't forget version information in …
(edit) @808   15 years Nicklas Nordborg References #110: Illumina detection P-value plug-in Static method in …
(edit) @807   15 years Nicklas Nordborg Fixes #140: Add support in build.xml for automatic download of BASE …
(edit) @806   15 years Jari Häkkinen Setting pre tag to trunk version of MergeBioAssay?.
(edit) @805   15 years Jari Häkkinen Fixes #137. Releasing MergeBioAssay? 2.1
(edit) @804   15 years Jari Häkkinen Addresses #137. Preparing release 2.1 of MergeBioAssay? package.
(edit) @803   15 years Jari Häkkinen Setting pre tag to trunk version of ReplicateError?.
(edit) @802   15 years Jari Häkkinen Fixes #129. Releasing ReplicateError? 1.3
(edit) @801   15 years Jari Häkkinen Addresses #129. Preparing release of ReplicateError? 1.3
(edit) @800   15 years Jari Häkkinen References #129
(edit) @799   15 years Jari Häkkinen Setting pre tag to trunk version of BaseFile?.
(edit) @798   15 years Jari Häkkinen Fixes #131. Releasing BaseFile? 1.0
(edit) @797   15 years Jari Häkkinen Addresses #131. Preparing release BaseFile? 1.0
(edit) @796   15 years Jari Häkkinen References #129. Improved table footnote.
(edit) @795   15 years Jari Häkkinen Fixes #83. Also shifted code lines to align the WA and AA class …
(edit) @794   15 years Jari Häkkinen References #129. Added note about different numbers in table and …
(edit) @793   15 years Jari Häkkinen References #129. No need to generate group information for within …
(edit) @792   15 years Jari Häkkinen Fixes #132. Spot object seems to never get more than one position, but …
(edit) @791   15 years Jari Häkkinen References #129. Removed unused code, moved common code to super …
(edit) @790   15 years Jari Häkkinen Addresses #129. Added proper publication figure references for the algos.
(edit) @789   15 years Jari Häkkinen Changed stray double space characters to single tab characters.
(edit) @788   15 years Jari Häkkinen Addresses #137. Added documentation.
(edit) @787   15 years Jari Häkkinen Forgot one copyright line.
(edit) @786   15 years Jari Häkkinen Addresses #129. Added reference to paper which this plug-in is based on.
(edit) @785   15 years Jari Häkkinen Removed trailing space character.
(edit) @784   15 years Jari Häkkinen Addresses #129. Changing to GPL3.
(edit) @783   15 years Jari Häkkinen Addresses #137. Changing to GPL3.
(edit) @782   15 years Jari Häkkinen Addresses #131. Changing to GPL3.
(edit) @781   15 years Jari Häkkinen Fixing svn properties.
(edit) @780   15 years Jari Häkkinen References #131. Fixing clean up.
(edit) @779   15 years Jari Häkkinen References #137. run should be chmod and fixed class path.
(edit) @778   15 years Jari Häkkinen Fixing svn properties.
(edit) @777   15 years Jari Häkkinen Addresses #137. README replaces doc/INSTALL.txt
(edit) @776   15 years Jari Häkkinen Addresses #137.
(edit) @775   15 years Jari Häkkinen References #131.
(edit) @774   15 years Jari Häkkinen References #129.
(edit) @773   15 years Jari Häkkinen References #129.
(edit) @772   15 years Jari Häkkinen References #129.
(edit) @771   15 years Jari Häkkinen Fixes #136. Version is propagated.
(edit) @770   15 years Jari Häkkinen Addresses #131. Added information on how to create a package.
(edit) @769   15 years Jari Häkkinen Fixes #133. Read comment made to the ticket.
(edit) @768   15 years Jari Häkkinen Fixes #131.
(edit) @767   15 years Jari Häkkinen Addresses #56. Making sure that this tree does not compile.
(edit) @766   15 years Jari Häkkinen Addresses #129. Updated configuration files, reworked html result …
(edit) @765   15 years Jari Häkkinen Addresses #131.
(edit) @764   15 years Jari Häkkinen Addresses #129. Added version info, not distributing source, …
(edit) @763   15 years Jari Häkkinen Moved README.old to lib.
(edit) @762   15 years Jari Häkkinen Moved Concept.ps to lib and added a PDF version of the file.
(edit) @761   15 years Jari Häkkinen Addresses #129. Added license and moved README to README.old
(edit) @760   15 years Jari Häkkinen Fixed spelling.
(edit) @759   15 years Jari Häkkinen Addresses #131. Added version info.
(edit) @758   15 years Jari Häkkinen Addresses #56, #129, #131. Created se.lu.onk.BaseFile? and moved …
(edit) @757   15 years Nicklas Nordborg Preparing for future release 1.0
(edit) @756   15 years Nicklas Nordborg Tagging 1.0beta
(edit) @755   15 years Martin Svensson Fixed weaknesses discovered with FindBugs?-eclipse plug-in
(edit) @754   15 years Martin Svensson References #119 Change to only create a row summary array if it has …
(edit) @753   15 years Martin Svensson The SpotData2Ch objects are now compared by their ratio-value and not …
(edit) @752   15 years Martin Svensson Fixes #119 Create Rank Invariant normalization
(edit) @751   15 years Martin Svensson References #119 Bug-fixing
(edit) @750   15 years Martin Svensson References # 119 The normalization algorithm is almost done. Some …
(edit) @749   15 years Martin Svensson References # 119 Started with the development of this plug-in. No …
(edit) @748   15 years Martin Svensson Fixes #117 Create average nomralization plug-in.
(edit) @747   15 years Martin Svensson References #124 Corrected a few more copy-paste mistake.
(edit) @746   15 years Martin Svensson Fixes #124 Corrected a copy-paste mistake. Also added …
(edit) @745   15 years Martin Svensson References #117 Bug-fixing
(edit) @744   15 years Martin Svensson References #117 Corrected a package name. Also changed the way global …
(edit) @743   15 years Martin Svensson References #117 The normalization is now done. Nothing has been tested …
(edit) @742   15 years Martin Svensson References #117 Cleaned up and refactored the classes. The Avg.norm. …
(edit) @741   15 years Nicklas Nordborg References #114. Upgrading to 1.0.0-M2 release of Apache FTP server.
(edit) @740   15 years Martin Svensson Change name of the package
(edit) @739   15 years Martin Svensson Added new files to the project such as license file, library-files and …
(edit) @738   15 years Martin Svensson Added BASE2WSClient.jar to svn:ignore
(edit) @737   15 years Martin Svensson Fixes #121 BGX-importer should 0-pad Array_Address_ID if the BGX-file …
(edit) @736   15 years Martin Svensson Fixes #112. Changed the property validation when installing a data …
(edit) @735   15 years Martin Svensson Correct the layout
(edit) @734   15 years Martin Svensson Changed the svn-properties so the pages can be viewed in the wiki
(edit) @733   15 years Martin Svensson References #122 Created README and INSTALL pages for the Normalization …
(edit) @732   15 years Martin Svensson References #112 Changed the exception message.
(edit) @731   15 years Martin Svensson Re-arrange in build file for the Normalization plug-in package.
(edit) @730   15 years Martin Svensson References #117 Average normalization plug-in is almost done. The …
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