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Diff Rev Age Author Log Message
(edit) @5476   3 years Nicklas Nordborg References #1142: Create MIPs flow cell and start sequencing Updated …
(edit) @5474   3 years Nicklas Nordborg References #1142: Create MIPs flow cell and start sequencing Added a …
(edit) @4766   4 years Nicklas Nordborg Changes for future release IncaXML2CSV 1.3
(edit) @4765   4 years Nicklas Nordborg Tagging IncaXML2CSV 1.2
(edit) @4764   4 years Nicklas Nordborg Preparing to release IncaXML2CSV 1.2
(edit) @4709   4 years Nicklas Nordborg References #1021: Add INCA 2.0 columns to the blacklist Added: * …
(edit) @4589   5 years Nicklas Nordborg References #997: Implement new secondary analysis pipeline Updated …
(edit) @4566   5 years Nicklas Nordborg References #983: Merge the Tophat alignment and Cufflinks job to a …
(edit) @4194   6 years Nicklas Nordborg Preparations for future release of INCA XML to CSV converter 1.2
(edit) @4193   6 years Nicklas Nordborg Tagging INCA XML to CSV converter 1.1
(edit) @4192   6 years Nicklas Nordborg Preparing to release INCA XML to CSV converter 1.1
(edit) @4191   6 years Nicklas Nordborg Fixes #914: Add more columns to the blacklist Blacklisted columns now …
(edit) @4045   6 years Nicklas Nordborg References #901: Set multiple paths for run-archive Updated the …
(edit) @3966   6 years Nicklas Nordborg Changes for future release IncaXml2Csv 1.1
(edit) @3965   6 years Nicklas Nordborg Tagging IncaXml2Csv 1.0
(edit) @3964   6 years Nicklas Nordborg Preparing to release IncaXml2Csv 1.0.
(edit) @3898   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Changes to make …
(edit) @3897   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Changes to make …
(edit) @3896   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Updated README …
(edit) @3894   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Arrgggh... …
(edit) @3893   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Ignore the new …
(edit) @3892   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Renamed JAR/TAR …
(edit) @3891   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Personal number …
(edit) @3890   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Added "Save as" …
(edit) @3887   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Added a writer …
(edit) @3885   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Added a SAX …
(edit) @3884   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Open a file …
(edit) @3883   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Added parser for …
(edit) @3881   6 years Nicklas Nordborg References #881: Implement INCA XML to CSV converter Added * Folder …
(edit) @3880   6 years Nicklas Nordborg Creating space for the new INCA XML to CSV converter project.
(edit) @3879   6 years Nicklas Nordborg Creating space for the new INCA XML to CSV converter project.
(edit) @3698   6 years Nicklas Nordborg Adding nextseq_status.sh script for checking the status of a NextSeq?
(edit) @3589   7 years Jari Häkkinen Restoring svn:eol-style to LF
(edit) @3586   7 years Jari Häkkinen Fixing svn:eol-style
(edit) @3585   7 years Jari Häkkinen Updating post-alingment script to latest released version. The script …
(edit) @3584   7 years Jari Häkkinen Fixing svndigest&svncopyright properties
(edit) @3583   7 years Jari Häkkinen Fixing Id keyword
(edit) @3099   7 years Nicklas Nordborg Updating Picard wrapper script to make it compatible with Picard 1.128 …
(edit) @2852   8 years Nicklas Nordborg Ignore .project file from Eclipse.
(edit) @2831   8 years Jari Häkkinen New version from Christian. added proper argument/option handling; …
(edit) @2830   8 years Jari Häkkinen Print integers as integers.
(edit) @2786   8 years Nicklas Nordborg References #653: Use explicit paths to all important program used in …
(edit) @2749   8 years Nicklas Nordborg Adding script for replacing tracking_id values in the fpkm_tracking …
(edit) @2696   8 years Nicklas Nordborg Adding script for fixing the unmapped.bam file generated by tophat so …
(edit) @2679   8 years Nicklas Nordborg Adding script for calculating average of fragment lengths.
(edit) @2567   8 years Nicklas Nordborg Removing scripts that are no longer used by reggie.
(edit) @2558   8 years Nicklas Nordborg Forgot to execute the last samtools command
(edit) @2557   8 years Nicklas Nordborg Added 'alignment_statisics.sh' which replaces the …
(edit) @2537   8 years Nicklas Nordborg Adding wrapper script for directing output to stderr or stdout …
(edit) @2496   8 years Nicklas Nordborg Adding svn properties
(edit) @2495   8 years Nicklas Nordborg Adding wrapper for calling trimmomatic. Includes default settings for …
(edit) @2442   8 years Nicklas Nordborg Check enironment variable PicardMemory? for amount of memory to give to …
(edit) @2430   8 years Nicklas Nordborg Switched from illumina2bam_wrapper to picard for demultiplexing. …
(edit) @2421   8 years Nicklas Nordborg Renamed the 'filtered' step to 'masked'. See …
(edit) @2413   8 years Nicklas Nordborg Remove 'filter_' prefix in the PE_filter script.
(edit) @2398   8 years Nicklas Nordborg Adding statistics_tophat.sh
(edit) @2396   8 years Nicklas Nordborg Adding tophat_single.sh and sync_resyltfiles.sh scrips. tophat_single …
(edit) @2393   8 years Nicklas Nordborg Adding PE_filter.sh script. Changes from original script is that …
(edit) @2387   8 years Nicklas Nordborg Scripts used for the demux and merge steps in reggie.
(edit) @2383   8 years Nicklas Nordborg Creating trunk and tags folder for the pipeline project.
(edit) @2382   8 years Nicklas Nordborg Creating root folder for the 'pipeline' scripts.
(add) @2381   8 years Nicklas Nordborg Adding folder for other projects.
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