source: plugins/base2/net.sf.basedb.illumina/trunk

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Diff Rev Age Author Log Message
(edit) @1218   12 years Jari Häkkinen Addresses #231. Improved documents and display link to illumina …
(edit) @1217   12 years Jari Häkkinen Addresses #248 and #252. Updated description to describe new features.
(edit) @1211   12 years Jari Häkkinen Addresses #248 and #252. Do not use 'externalId' field if save to file …
(edit) @1210   12 years Jari Häkkinen Addresses #248 and #252. Median fixed.
(edit) @1208   12 years Jari Häkkinen Moved close call to proper location.
(edit) @1207   12 years Jari Häkkinen Addresses #248 and #252. Documentet parameter for saving background …
(edit) @1206   12 years Jari Häkkinen Addresses #248 and #252. File contains relevant information now. Mean …
(edit) @1205   12 years Jari Häkkinen Addresses #248 and #252. Optionally creating and attaching background …
(edit) @1204   12 years Jari Häkkinen Fixed typo.
(edit) @1203   12 years Jari Häkkinen Improved documentation for Background correction plug-in
(edit) @1197   12 years Jari Häkkinen Minor change.
(edit) @1196   12 years Jari Häkkinen Fixed internal refs.
(edit) @1189   12 years Nicklas Nordborg References #257: Fix issues with the BGX reporter importer due to …
(edit) @1187   12 years Nicklas Nordborg Fixes #257: Fix issues with the BGX reporter importer due to changes …
(edit) @1179   13 years Jari Häkkinen Fixes #251.
(edit) @1178   13 years Jari Häkkinen Changed 'Controls summary' to 'Control summary'.
(edit) @1175   13 years Jari Häkkinen Updated release procedure. Fixed BASE version requirement.
(edit) @1174   13 years Jari Häkkinen Preparing for future 1.5 release.
(edit) @1172   13 years Jari Häkkinen Preparing release 1.4 once more
(edit) @1169   13 years Jari Häkkinen Preparing release 1.4
(edit) @1168   13 years Jari Häkkinen Fixes #204. Also improved docs.
(edit) @1167   13 years Jari Häkkinen Fixes #113. The code change in changeset:1114 is valid, fixed docs.
(edit) @1166   13 years Jari Häkkinen Fixes #235 and spelling.
(edit) @1149   13 years Nicklas Nordborg Fixes #240: Bead summary importer should have an option to fail if the …
(edit) @1148   13 years Nicklas Nordborg Fixes #238: Supply plug-in configuration files for MicroRNA files
(edit) @1147   13 years Nicklas Nordborg Fixes #237: Add support for MicroRNA BGX files to reporter importer
(edit) @1146   13 years Nicklas Nordborg Fixes #239: BGX reporter/feature importer auto-detection matches any …
(edit) @1142   13 years Martin Svensson Fixes #180 Overview plot extensions for Illumina expression
(edit) @1141   13 years Martin Svensson References #180 The work with the plotting extension is now finished …
(edit) @1137   13 years Martin Svensson References #180. Some necassary libraries for the JFreePlots.
(edit) @1136   13 years Martin Svensson References #180. Some necassary libraries for the JFreePlots.
(edit) @1135   13 years Martin Svensson References #180 The overview plots are almost finished. Some smaller …
(edit) @1133   13 years Martin Svensson References #180 Created classes for the control summary plots.
(edit) @1124   13 years Jari Häkkinen Fixes #231.
(edit) @1123   13 years Jari Häkkinen Fixed CamelCase escape
(edit) @1122   13 years Jari Häkkinen Fixes #227.
(edit) @1121   13 years Jari Häkkinen Fixes #230. Lower limit is now 1.
(edit) @1120   13 years Jari Häkkinen Fixes #232.
(edit) @1114   13 years Jari Häkkinen Addresses #113. The Pvalue calculation is in place. Need to figure …
(edit) @1113   13 years Jari Häkkinen Addresses #227
(edit) @1112   13 years Jari Häkkinen Addresses #227
(edit) @1111   13 years Jari Häkkinen Adding and changing svn properties.
(edit) @1097   13 years Martin Svensson References #180. The plot-extension is almost done. How the spot data …
(edit) @1093   13 years Martin Svensson References #182 The information is now inserted in the README file, in …
(edit) @1085   13 years Nicklas Nordborg Fixes #215: BGX reporter importer hangs if the [Controls] section has …
(edit) @1038   13 years Jari Häkkinen Added some detailed information on detection P-calue plug-in
(edit) @1032   13 years Nicklas Nordborg Fixes #202: Change source files to UTF-8
(edit) @970   13 years Martin Svensson Preparing for future release Illumina package v1.4
(edit) @968   13 years Martin Svensson Preparing release 1.3
(edit) @959   13 years Martin Svensson Fixes #164 Improve documentation on how to upgrade the illumina …
(edit) @957   13 years Nicklas Nordborg Fixes #175: Update the ant script to include contrib directory when …
(edit) @944   13 years Martin Svensson References #173 The 'float to integer' conversion has been removed but …
(edit) @943   13 years Martin Svensson Fixes #171 IBS raw data importer should be able to handle floats in …
(edit) @942   13 years Martin Svensson Fixes #170 Result dialouge after batch importing several raw bioassays …
(edit) @941   13 years Martin Svensson References #174 license text should referr to the Illumina plug-in package
(edit) @940   13 years Martin Svensson Fixes #174 Change license to GPL 3 for the illumina package
(edit) @938   13 years Jari Häkkinen Added svn property.
(edit) @937   13 years Jari Häkkinen Added beadstudio data to IBS data converter.
(edit) @914   14 years Nicklas Nordborg Adding note about checking that the information on the download page …
(edit) @913   14 years Nicklas Nordborg Preparing for future release 1.3
(edit) @911   14 years Nicklas Nordborg Preparing release of Illumina package 1.2
(edit) @873   14 years Nicklas Nordborg Fixes #151: Use two queries instead of one in DetectionPValue.run() method
(edit) @833   14 years Nicklas Nordborg Fixes #150: Fix layout of DetectionPValue.java
(edit) @817   14 years Jari Häkkinen Fixing typo.
(edit) @816   14 years Martin Svensson References #143 Removed unnecessary comments.
(edit) @815   14 years Martin Svensson Fixes #143 Illumina plug-in package installer requests wrong permissions
(edit) @814   14 years Nicklas Nordborg References #142. Removed problematic character. For historical reasons …
(edit) @813   14 years Martin Svensson Fixes #142 Illumina installer plugin cannot be installed in some cases
(edit) @810   14 years Nicklas Nordborg Fixes #138: Importing data for multiple raw bioassays in one step
(edit) @809   14 years Nicklas Nordborg Updated release doc so we don't forget version information in …
(edit) @808   14 years Nicklas Nordborg References #110: Illumina detection P-value plug-in Static method in …
(edit) @807   14 years Nicklas Nordborg Fixes #140: Add support in build.xml for automatic download of BASE …
(edit) @738   14 years Martin Svensson Added BASE2WSClient.jar to svn:ignore
(edit) @737   14 years Martin Svensson Fixes #121 BGX-importer should 0-pad Array_Address_ID if the BGX-file …
(edit) @736   14 years Martin Svensson Fixes #112. Changed the property validation when installing a data …
(edit) @732   14 years Martin Svensson References #112 Changed the exception message.
(edit) @718   14 years Jari Häkkinen Also share manifest file.
(edit) @703   14 years Jari Häkkinen Preparing for future 1.2 release
(edit) @701   14 years Jari Häkkinen Preparing release of Illumina plug-in package 1.1
(edit) @700   14 years Jari Häkkinen Improved description.
(edit) @699   14 years Jari Häkkinen Added two new plugins to the list of plugins. Alphabetized list.
(edit) @698   14 years Jari Häkkinen Fixes #110.
(edit) @689   14 years Jari Häkkinen Addresses #110. Added MAD based outlier removal of negative control …
(edit) @688   14 years Jari Häkkinen Typo
(edit) @686   14 years Jari Häkkinen Addresses #110.
(edit) @685   14 years Jari Häkkinen Improved text.
(edit) @684   14 years Jari Häkkinen Fixes #104. Docs already fixed, added build check.
(edit) @681   14 years Jari Häkkinen Addresses #110. Single sample Whole Genome BeadChips? detection P-value …
(edit) @680   14 years Jari Häkkinen Bumped version number to pre1.1
(edit) @679   14 years Jari Häkkinen Moving flush call to a more appropriate place.
(edit) @678   14 years Jari Häkkinen No configurations for BeadSummaryImporter?
(edit) @669   14 years Jari Häkkinen Adding background correction plugin
(edit) @660   14 years Jari Häkkinen Alphabetized list and fixed indendation.
(edit) @646   14 years Jari Häkkinen Fixing copyright lines.
(edit) @645   14 years Jari Häkkinen Updated the BASE core jar requirements.
(edit) @634   14 years Nicklas Nordborg Added release procedure instructions.
(edit) @633   14 years Nicklas Nordborg Changes for future release 1.1
(edit) @631   14 years Nicklas Nordborg References #91: Import Illumina Bead Summary(IBS) files as raw data …
(edit) @630   14 years Nicklas Nordborg References #94: Import reporter annotations from bgx files Added …
(edit) @629   14 years Nicklas Nordborg References #89: Installation program and documentation Preparing for …
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