source: plugins/base2

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Diff Rev Age Author Log Message
(edit) @1278   12 years Nicklas Nordborg Fixes #287: Change "source" and "target" compilation options to 1.6 …
(edit) @1276   12 years Nicklas Nordborg Fixes #285: Change "source" and "target" compilation options to 1.6
(edit) @1267   12 years Nicklas Nordborg Preparing for future release 1.7
(edit) @1266   12 years Nicklas Nordborg Tagging Illumina plugins 1.6
(edit) @1265   12 years Nicklas Nordborg Preparing release of Illumina plugins 1.6
(edit) @1258   12 years Nicklas Nordborg Fix code using deprecated methods in BASE API due to …
(edit) @1238   12 years Nicklas Nordborg Fixes #249: Version should autopropagate from build.xml to …
(edit) @1237   12 years Nicklas Nordborg Fixes #274: Upgrading the Illumina package does not update the …
(edit) @1236   12 years Jari Häkkinen Fixed layout issues in trac presentation.
(edit) @1235   12 years Jari Häkkinen Merging 1.5.1 to illumina package trunk
(edit) @1234   12 years Jari Häkkinen Tagging release 1.5.1
(edit) @1233   12 years Jari Häkkinen Preparing to release Illumina packache v 1.5.1
(edit) @1232   12 years Jari Häkkinen Fixes #273
(edit) @1231   12 years Jari Häkkinen Creating a bug fix branch.
(edit) @1226   12 years Nicklas Nordborg Fixes #265: Investigate and fix issues with external files introduced …
(edit) @1224   12 years Jari Häkkinen Reverting changset:1164.
(edit) @1223   12 years Nicklas Nordborg Preparing for future release 1.6
(edit) @1222   12 years Nicklas Nordborg Tagging Illumina plug-ins 1.5
(edit) @1221   12 years Nicklas Nordborg Preparing release Illumina plug-ins 1.5
(edit) @1220   12 years Jari Häkkinen Write error messages to stderr
(edit) @1219   13 years Jari Häkkinen Typo.
(edit) @1218   13 years Jari Häkkinen Addresses #231. Improved documents and display link to illumina …
(edit) @1217   13 years Jari Häkkinen Addresses #248 and #252. Updated description to describe new features.
(edit) @1216   13 years Jari Häkkinen Tagging release 1.1 of Agilent plug-ins package.
(edit) @1215   13 years Jari Häkkinen Releasing version 1.1 of the Agilents plug-in package.
(edit) @1214   13 years Jari Häkkinen Description updated
(edit) @1213   13 years Jari Häkkinen Updated install instructions and added upgraded instructions.
(edit) @1212   13 years Jari Häkkinen Adding support to save background expression matrix to file.
(edit) @1211   13 years Jari Häkkinen Addresses #248 and #252. Do not use 'externalId' field if save to file …
(edit) @1210   13 years Jari Häkkinen Addresses #248 and #252. Median fixed.
(edit) @1208   13 years Jari Häkkinen Moved close call to proper location.
(edit) @1207   13 years Jari Häkkinen Addresses #248 and #252. Documentet parameter for saving background …
(edit) @1206   13 years Jari Häkkinen Addresses #248 and #252. File contains relevant information now. Mean …
(edit) @1205   13 years Jari Häkkinen Addresses #248 and #252. Optionally creating and attaching background …
(edit) @1204   13 years Jari Häkkinen Fixed typo.
(edit) @1203   13 years Jari Häkkinen Improved documentation for Background correction plug-in
(edit) @1202   13 years Jari Häkkinen Preparing for future release 1.1
(edit) @1201   13 years Jari Häkkinen Tagging version 1.0
(edit) @1200   13 years Jari Häkkinen Preparing release of version 1.0
(edit) @1199   13 years Jari Häkkinen net.sf.basdb.agilent first commit
(edit) @1198   13 years Jari Häkkinen Setting svndigest:ignore property
(edit) @1197   13 years Jari Häkkinen Minor change.
(edit) @1196   13 years Jari Häkkinen Fixed internal refs.
(edit) @1195   13 years Jari Häkkinen Setting up repository for net.sf.basedb.agilent package
(edit) @1194   13 years Jari Häkkinen Typo.
(edit) @1189   13 years Nicklas Nordborg References #257: Fix issues with the BGX reporter importer due to …
(edit) @1188   13 years Jari Häkkinen Committing patch provided by Gildas Le Corguillé
(edit) @1187   13 years Nicklas Nordborg Fixes #257: Fix issues with the BGX reporter importer due to changes …
(edit) @1186   13 years Jari Häkkinen Bumping BASE requirement to 2.15
(edit) @1185   13 years Jari Häkkinen Improved documentation.
(edit) @1179   13 years Jari Häkkinen Fixes #251.
(edit) @1178   13 years Jari Häkkinen Changed 'Controls summary' to 'Control summary'.
(edit) @1177   13 years Jari Häkkinen Improved qQuantiler docs.
(edit) @1175   13 years Jari Häkkinen Updated release procedure. Fixed BASE version requirement.
(edit) @1174   13 years Jari Häkkinen Preparing for future 1.5 release.
(edit) @1173   13 years Jari Häkkinen Tagging Illumina package 1.4 a second time
(edit) @1172   13 years Jari Häkkinen Preparing release 1.4 once more
(edit) @1171   13 years Jari Häkkinen Missed to change on version number in source code.
(edit) @1170   13 years Jari Häkkinen Tagging Illumina package 1.4
(edit) @1169   13 years Jari Häkkinen Preparing release 1.4
(edit) @1168   13 years Jari Häkkinen Fixes #204. Also improved docs.
(edit) @1167   13 years Jari Häkkinen Fixes #113. The code change in changeset:1114 is valid, fixed docs.
(edit) @1166   13 years Jari Häkkinen Fixes #235 and spelling.
(edit) @1164   13 years Jari Häkkinen Fixes #247. A work around for the erroneous export from exportPlainMatrix.
(edit) @1149   13 years Nicklas Nordborg Fixes #240: Bead summary importer should have an option to fail if the …
(edit) @1148   13 years Nicklas Nordborg Fixes #238: Supply plug-in configuration files for MicroRNA files
(edit) @1147   13 years Nicklas Nordborg Fixes #237: Add support for MicroRNA BGX files to reporter importer
(edit) @1146   13 years Nicklas Nordborg Fixes #239: BGX reporter/feature importer auto-detection matches any …
(edit) @1144   13 years Martin Svensson References #228 Updated the method that calculates bioassayset's …
(edit) @1143   13 years Martin Svensson References #228 Added parameter to define which average method to use …
(edit) @1142   13 years Martin Svensson Fixes #180 Overview plot extensions for Illumina expression
(edit) @1141   13 years Martin Svensson References #180 The work with the plotting extension is now finished …
(edit) @1137   13 years Martin Svensson References #180. Some necassary libraries for the JFreePlots.
(edit) @1136   13 years Martin Svensson References #180. Some necassary libraries for the JFreePlots.
(edit) @1135   13 years Martin Svensson References #180 The overview plots are almost finished. Some smaller …
(edit) @1133   13 years Martin Svensson References #180 Created classes for the control summary plots.
(edit) @1124   13 years Jari Häkkinen Fixes #231.
(edit) @1123   13 years Jari Häkkinen Fixed CamelCase escape
(edit) @1122   13 years Jari Häkkinen Fixes #227.
(edit) @1121   13 years Jari Häkkinen Fixes #230. Lower limit is now 1.
(edit) @1120   13 years Jari Häkkinen Fixes #232.
(edit) @1114   13 years Jari Häkkinen Addresses #113. The Pvalue calculation is in place. Need to figure …
(edit) @1113   13 years Jari Häkkinen Addresses #227
(edit) @1112   13 years Jari Häkkinen Addresses #227
(edit) @1111   13 years Jari Häkkinen Adding and changing svn properties.
(edit) @1097   13 years Martin Svensson References #180. The plot-extension is almost done. How the spot data …
(edit) @1093   13 years Martin Svensson References #182 The information is now inserted in the README file, in …
(edit) @1087   13 years Martin Svensson Fixes #195 net.sf.basedb.normalizers: Normalizers should ask user for …
(edit) @1085   13 years Nicklas Nordborg Fixes #215: BGX reporter importer hangs if the [Controls] section has …
(edit) @1084   13 years Martin Svensson References #195 Updates everything except documentation/wiki, cause …
(edit) @1080   13 years Jari Häkkinen Changes for future release 0.3
(edit) @1079   13 years Jari Häkkinen Fixes #118. qQuantiler will only show up in proper context and …
(edit) @1078   13 years Jari Häkkinen Tagging version 0.2 of PluginUtilities?.
(edit) @1077   13 years Jari Häkkinen Releasing version 0.2 of PluginUtilities?.
(edit) @1076   13 years Jari Häkkinen Adding context checks for number of channels.
(edit) @1075   13 years Jari Häkkinen Cleaner code, removed unused imports.
(edit) @1074   13 years Jari Häkkinen Addresses #118. Added documentation for qQuantiler.
(edit) @1073   13 years Jari Häkkinen Addresses #118. q=max(10,min(100,target_size/10))
(edit) @1072   13 years Jari Häkkinen Fixing cut&paste typo. Thanks Peter.
(edit) @1067   13 years Jari Häkkinen Addresses #118. Forcing negative and 0 intensities to be NaNs? with 0 …
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