source: plugins/base2

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Diff Rev Age Author Log Message
(edit) @3477   7 years Jari Häkkinen Added note on what is considered a negative control.
(edit) @2759   8 years Nicklas Nordborg References #652: New location of BASE JAR files Normalizers trunk.
(edit) @2756   8 years Nicklas Nordborg References #652: New location of BASE JAR files Illumina plug-ins trunk.
(edit) @2286   8 years Nicklas Nordborg References #588: Update extensions to target Java 1.7 and BASE 3.3 …
(edit) @2284   8 years Nicklas Nordborg References #588: Update extensions to target Java 1.7 and BASE 3.3 …
(edit) @2283   8 years Nicklas Nordborg References #588: Update extensions to target Java 1.7 and BASE 3.3 …
(edit) @2182   9 years Nicklas Nordborg Fixes #552: PluginUtilities?-0.2.jar is in incorrect location Download …
(edit) @2181   9 years Nicklas Nordborg References #551: Add 'install' target to normalizers build script Add …
(edit) @2180   9 years Nicklas Nordborg Fixes #551: Add 'install' target to normalizers build script
(edit) @2179   9 years Nicklas Nordborg Update build path for Eclipse to use the BASE 3.2.4 jar files. Related …
(edit) @2177   9 years Jari Häkkinen Tagging release 1.1-beta2
(edit) @2176   9 years Jari Häkkinen Changes from release procedure and other minor things.
(edit) @2175   9 years Jari Häkkinen Added blank line in parameter help string
(edit) @2174   9 years olle Refs #541. Refs #228. Outermost Ant build XML file updated by …
(edit) @2173   9 years Jari Häkkinen Refs #228 and #541. Improving doc and help string
(edit) @2167   9 years olle Refs #541. Rank invariant normalization updated to store data in same …
(edit) @2166   9 years olle Refs #228. Refs #541. Average normalization updated to untransform …
(edit) @2165   9 years olle Refs #228. Refs #541. Quantile normalization updated to untransform …
(edit) @2156   9 years olle Typo fixed in help text.
(edit) @2155   9 years Jari Häkkinen Minor improvements on help text
(edit) @2154   9 years olle Refs #228. Classes/files AverageNormalization.java and …
(edit) @1542   10 years Nicklas Nordborg Fixes #363: Add 'install' target to ant build script
(edit) @1455   11 years Nicklas Nordborg Tagging 'Normalization package 1.1-beta'
(edit) @1454   11 years Nicklas Nordborg Preparing 'Normalization package 1.1-beta' release.
(edit) @1448   11 years Nicklas Nordborg Changes for future release 'Illumina plug-ins 1.8'
(edit) @1447   11 years Nicklas Nordborg Tagging 'Illumina package 1.7'
(edit) @1446   11 years Nicklas Nordborg Preparing 'Illumina package 1.7' release.
(edit) @1445   11 years Nicklas Nordborg References #311: Updates required for BASE 3 support Need to renamed …
(edit) @1410   11 years Nicklas Nordborg References #331: Updates required for BASE 3 support The code …
(edit) @1388   11 years Nicklas Nordborg The .settings directory should not have been included in [1387]
(edit) @1387   11 years Nicklas Nordborg Adding .classpath to svn.
(edit) @1386   11 years Nicklas Nordborg Fixes #311: Updates required for BASE 3 support BGX and SNP manifest …
(edit) @1385   11 years Martin Svensson References #311 The Illumina plugin package can now be build with …
(edit) @1295   11 years Nicklas Nordborg Fixes #280: Plug-in should suggest better job names
(edit) @1293   11 years Nicklas Nordborg Fixes #278: Plug-in should suggest better job names
(edit) @1292   11 years Nicklas Nordborg Fixes #281: Plug-in should suggest better job names Also removed …
(edit) @1291   11 years Nicklas Nordborg Fixes #289: Add 'download-lib' target to ant buildfile and remove …
(edit) @1278   12 years Nicklas Nordborg Fixes #287: Change "source" and "target" compilation options to 1.6 …
(edit) @1276   12 years Nicklas Nordborg Fixes #285: Change "source" and "target" compilation options to 1.6
(edit) @1267   12 years Nicklas Nordborg Preparing for future release 1.7
(edit) @1266   12 years Nicklas Nordborg Tagging Illumina plugins 1.6
(edit) @1265   12 years Nicklas Nordborg Preparing release of Illumina plugins 1.6
(edit) @1258   12 years Nicklas Nordborg Fix code using deprecated methods in BASE API due to …
(edit) @1238   12 years Nicklas Nordborg Fixes #249: Version should autopropagate from build.xml to …
(edit) @1237   12 years Nicklas Nordborg Fixes #274: Upgrading the Illumina package does not update the …
(edit) @1236   12 years Jari Häkkinen Fixed layout issues in trac presentation.
(edit) @1235   12 years Jari Häkkinen Merging 1.5.1 to illumina package trunk
(edit) @1234   12 years Jari Häkkinen Tagging release 1.5.1
(edit) @1233   12 years Jari Häkkinen Preparing to release Illumina packache v 1.5.1
(edit) @1232   12 years Jari Häkkinen Fixes #273
(edit) @1231   12 years Jari Häkkinen Creating a bug fix branch.
(edit) @1226   12 years Nicklas Nordborg Fixes #265: Investigate and fix issues with external files introduced …
(edit) @1224   12 years Jari Häkkinen Reverting changset:1164.
(edit) @1223   12 years Nicklas Nordborg Preparing for future release 1.6
(edit) @1222   12 years Nicklas Nordborg Tagging Illumina plug-ins 1.5
(edit) @1221   12 years Nicklas Nordborg Preparing release Illumina plug-ins 1.5
(edit) @1220   12 years Jari Häkkinen Write error messages to stderr
(edit) @1219   12 years Jari Häkkinen Typo.
(edit) @1218   12 years Jari Häkkinen Addresses #231. Improved documents and display link to illumina …
(edit) @1217   12 years Jari Häkkinen Addresses #248 and #252. Updated description to describe new features.
(edit) @1216   12 years Jari Häkkinen Tagging release 1.1 of Agilent plug-ins package.
(edit) @1215   12 years Jari Häkkinen Releasing version 1.1 of the Agilents plug-in package.
(edit) @1214   12 years Jari Häkkinen Description updated
(edit) @1213   12 years Jari Häkkinen Updated install instructions and added upgraded instructions.
(edit) @1212   12 years Jari Häkkinen Adding support to save background expression matrix to file.
(edit) @1211   12 years Jari Häkkinen Addresses #248 and #252. Do not use 'externalId' field if save to file …
(edit) @1210   12 years Jari Häkkinen Addresses #248 and #252. Median fixed.
(edit) @1208   12 years Jari Häkkinen Moved close call to proper location.
(edit) @1207   12 years Jari Häkkinen Addresses #248 and #252. Documentet parameter for saving background …
(edit) @1206   12 years Jari Häkkinen Addresses #248 and #252. File contains relevant information now. Mean …
(edit) @1205   12 years Jari Häkkinen Addresses #248 and #252. Optionally creating and attaching background …
(edit) @1204   12 years Jari Häkkinen Fixed typo.
(edit) @1203   12 years Jari Häkkinen Improved documentation for Background correction plug-in
(edit) @1202   12 years Jari Häkkinen Preparing for future release 1.1
(edit) @1201   12 years Jari Häkkinen Tagging version 1.0
(edit) @1200   12 years Jari Häkkinen Preparing release of version 1.0
(edit) @1199   12 years Jari Häkkinen net.sf.basdb.agilent first commit
(edit) @1198   12 years Jari Häkkinen Setting svndigest:ignore property
(edit) @1197   12 years Jari Häkkinen Minor change.
(edit) @1196   12 years Jari Häkkinen Fixed internal refs.
(edit) @1195   12 years Jari Häkkinen Setting up repository for net.sf.basedb.agilent package
(edit) @1194   12 years Jari Häkkinen Typo.
(edit) @1189   12 years Nicklas Nordborg References #257: Fix issues with the BGX reporter importer due to …
(edit) @1188   12 years Jari Häkkinen Committing patch provided by Gildas Le Corguillé
(edit) @1187   12 years Nicklas Nordborg Fixes #257: Fix issues with the BGX reporter importer due to changes …
(edit) @1186   12 years Jari Häkkinen Bumping BASE requirement to 2.15
(edit) @1185   13 years Jari Häkkinen Improved documentation.
(edit) @1179   13 years Jari Häkkinen Fixes #251.
(edit) @1178   13 years Jari Häkkinen Changed 'Controls summary' to 'Control summary'.
(edit) @1177   13 years Jari Häkkinen Improved qQuantiler docs.
(edit) @1175   13 years Jari Häkkinen Updated release procedure. Fixed BASE version requirement.
(edit) @1174   13 years Jari Häkkinen Preparing for future 1.5 release.
(edit) @1173   13 years Jari Häkkinen Tagging Illumina package 1.4 a second time
(edit) @1172   13 years Jari Häkkinen Preparing release 1.4 once more
(edit) @1171   13 years Jari Häkkinen Missed to change on version number in source code.
(edit) @1170   13 years Jari Häkkinen Tagging Illumina package 1.4
(edit) @1169   13 years Jari Häkkinen Preparing release 1.4
(edit) @1168   13 years Jari Häkkinen Fixes #204. Also improved docs.
(edit) @1167   13 years Jari Häkkinen Fixes #113. The code change in changeset:1114 is valid, fixed docs.
(edit) @1166   13 years Jari Häkkinen Fixes #235 and spelling.
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